9NFT
PRO-37587 bound to SARS-CoV-2 Spike protein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1141 | 126724.2 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, F, H (D, F, H) | PRO-37587 FAB light chain | polymer | 216 | 22843.3 | 3 | Homo sapiens (human) | ||
| 3 | E, G, I (E, G, I) | PRO-37587 FAB heavy chain | polymer | 221 | 23607.3 | 3 | Homo sapiens (human) | ||
| 4 | AA, BA, CA, DA, EA... (B, A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) PubChem (24139) |
Sequence modifications
A, B, C: 1 - 1144 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Val 67 | Ala 67 | variant |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Ile 95 | Thr 95 | variant |
| Asp 145 | Gly 142 | variant |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| - | Tyr 145 | deletion |
| - | Asn 211 | deletion |
| Ile 212 | Leu 212 | variant |
| Glu 214 | - | insertion |
| Pro 214 | - | insertion |
| Glu 214 | - | insertion |
| Asp 339 | Gly 339 | variant |
| Leu 371 | Ser 371 | variant |
| Pro 373 | Ser 373 | variant |
| Phe 375 | Ser 375 | variant |
| Asn 417 | Lys 417 | variant |
| Lys 440 | Asn 440 | variant |
| Ser 446 | Gly 446 | variant |
| Asn 477 | Ser 477 | variant |
| Lys 478 | Thr 478 | variant |
| Ala 484 | Glu 484 | variant |
| Arg 493 | Gln 493 | variant |
| Ser 496 | Gly 496 | variant |
| Arg 498 | Gln 498 | variant |
| Tyr 501 | Asn 501 | variant |
| His 505 | Tyr 505 | variant |
| Lys 547 | Thr 547 | variant |
| Gly 614 | Asp 614 | variant |
| Tyr 655 | His 655 | variant |
| Lys 679 | Asn 679 | variant |
| His 681 | Pro 681 | variant |
| Ala 683 | Arg 683 | variant |
| Ala 685 | Arg 685 | variant |
| Lys 764 | Asn 764 | variant |
| Tyr 796 | Asp 796 | variant |
| Pro 817 | Phe 817 | variant |
| Lys 856 | Asn 856 | variant |
| Pro 892 | Ala 892 | variant |
| Pro 899 | Ala 899 | variant |
| Pro 942 | Ala 942 | variant |
| His 954 | Gln 954 | variant |
| Lys 969 | Asn 969 | variant |
| Phe 981 | Leu 981 | variant |
| Pro 986 | Lys 986 | variant |
| Pro 987 | Val 987 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 519524.4 | |
| Non-Polymers* | Number of molecules | 39 |
| Total formula weight | 8627.1 | |
| All* | Total formula weight | 528151.5 |
