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9N70

SSU processome maturation and disassembly, State E

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L0)
5'ETS rRNApolymer700225543.11GenBank (329138943)Saccharomyces cerevisiae S288C
2B
(L1)
18S rRNApolymer1810583040.11GenBank (329138943)Saccharomyces cerevisiae S288C
3C
(L2)
Saccharomyces cerevisiae U3a gene for small nucleolar RNA U3apolymer333106503.31Saccharomyces cerevisiae S288C
4D
(L3)
40S ribosomal protein S18-Apolymer14617071.61UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae S288CSmall ribosomal subunit protein uS13-A
5E
(L4)
40S ribosomal protein S4-Apolymer26129469.31UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae S288CRP5,S7,YS6
6F
(L5)
40S ribosomal protein S5polymer22525072.61UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae S288CRP14,S2,YS8
7G
(L6)
40S ribosomal protein S6-Apolymer23627054.51UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae S288CRP9,S10,YS4
8H
(L7)
40S ribosomal protein S7-Apolymer19021658.21UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae S288CRP30,RP40
9I
(L8)
40S ribosomal protein S8-Apolymer20022537.81UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae S288CRP19,S14,YS9
10J
(L9)
40S ribosomal protein S9-Apolymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae S288CRP21,S13,YP28,YS11
11K
(LC)
40S ribosomal protein S16-Apolymer14315877.51UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae S288CRP61R
12L
(LD)
40S ribosomal protein S11-Apolymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae S288CRP41,S18,YS12
13M
(LE)
40S ribosomal protein S22-Apolymer13014650.11UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae S288CRP50,S24,YP58,YS22
14N
(LF)
40S ribosomal protein S24-Apolymer13515362.81UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae S288CRP50
15O
(LG)
40S ribosomal protein S28-Apolymer677605.81UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae S288CS33,Small ribosomal subunit protein eS28-A,YS27
16P
(LH)
NET1-associated nuclear protein 1polymer896101341.71UniProt (Q02931)
Pfam (PF00400)
Saccharomyces cerevisiae S288CU three protein 17,t-17,U3 protein 17 required for transcription,U3 small nucleolar RNA-associated protein 17,U3 snoRNA-associated protein 17
17Q
(LI)
U3 small nucleolar RNA-associated protein 8polymer71380269.61UniProt (P53276)
Pfam (PF10395)
Pfam (PF22542)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 8,U three protein 8,U3 protein 8 required for transcription,t-UTP8
18R
(LJ)
U3 small nucleolar RNA-associated protein 15polymer51357765.31UniProt (Q04305)
Pfam (PF00400)
Pfam (PF09384)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 15,U three protein 15,U3 protein 15 required for transcription,t-UTP15
19S
(LK)
U3 small nucleolar RNA-associated protein 9polymer57565347.31UniProt (P38882)Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 9,U three protein 9,U3 protein 9 required for transcription,t-UTP9
20T
(LL)
U3 small nucleolar RNA-associated protein 5polymer64372079.41UniProt (Q04177)
Pfam (PF04003)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 5,U three protein 5,U3 protein 5 required for transcription,t-UTP5
21U
(LM)
U3 small nucleolar RNA-associated protein 10polymer1769200299.01UniProt (P42945)
Pfam (PF12397)
Pfam (PF08146)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 10,U three protein 10,U3 protein 10 required for transcription,t-UTP10
22V
(LN)
U3 small nucleolar RNA-associated protein 4polymer77687909.21UniProt (Q06679)
Pfam (PF00400)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 4,U three protein 4,U3 protein 4 required for transcription,t-UTP4
23W
(LO)
Periodic tryptophan protein 2polymer923104177.01UniProt (P25635)
Pfam (PF00400)
Pfam (PF04003)
Saccharomyces cerevisiae S288CU three protein 1,U3 small nucleolar RNA-associated protein 1,U3 snoRNA-associated protein 1
24X
(LP)
U3 small nucleolar RNA-associated protein 6polymer44052495.31UniProt (Q02354)
Pfam (PF08640)
Pfam (PF05843)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 6,U three protein 6
25Y
(LQ)
U3 small nucleolar RNA-associated protein 12polymer943106481.11UniProt (Q12220)
Pfam (PF00400)
Pfam (PF04003)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 12,DOM34-interacting protein 2,U three protein 12
26Z
(LR)
U3 small nucleolar RNA-associated protein 13polymer81791132.61UniProt (Q05946)
Pfam (PF00400)
Pfam (PF08625)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 13,U three protein 13
27AA
(LS)
U3 small nucleolar RNA-associated protein 18polymer59466574.21UniProt (P40362)
Pfam (PF00400)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 18,U three protein 18
28BA
(LT)
U3 small nucleolar RNA-associated protein 21polymer939104927.81UniProt (Q06078)
Pfam (PF00400)
Pfam (PF04192)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 21,U three protein 21
29CA
(LU)
Protein SOF1polymer48956888.91UniProt (P33750)
Pfam (PF00400)
Pfam (PF04158)
Saccharomyces cerevisiae S288CU3 small nucleolar RNA-associated protein SOF1,U3 snoRNA-associated protein SOF1
30DA
(LV)
Ribosome biogenesis protein ENP2polymer70781864.21UniProt (P48234)
Pfam (PF08159)
Saccharomyces cerevisiae S288CEssential nuclear protein 2
31EA
(LW)
U3 small nucleolar RNA-associated protein 7polymer55462418.61UniProt (P40055)
Pfam (PF00400)
Pfam (PF08149)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 7,U three protein 7
32FA, GA
(LX, LY)
RNA cytidine acetyltransferasepolymer1056119509.42UniProt (P53914)
Pfam (PF08351)
Pfam (PF05127)
Pfam (PF13718)
Pfam (PF13725)
Saccharomyces cerevisiae S288C18S rRNA cytosine acetyltransferase,Killer toxin-resistance protein 33,Ribosomal RNA cytidine acetyltransferase 1
33HA
(LZ)
U3 small nucleolar ribonucleoprotein protein IMP3polymer18321928.51UniProt (P32899)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae S288CU3 snoRNP protein IMP3,Interacting with MPP10 protein 3
34IA
(NA)
U3 small nucleolar RNA-associated protein MPP10polymer59367042.51UniProt (P47083)
Pfam (PF04006)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein MPP10,M phase phosphoprotein 10
35JA
(NB)
Something about silencing protein 10polymer61070364.41UniProt (Q12136)
Pfam (PF04000)
Pfam (PF09368)
Saccharomyces cerevisiae S288CU three protein 3,U3 small nucleolar RNA-associated protein 3,U3 snoRNA-associated protein 11
36KA
(NC)
U3 small nucleolar ribonucleoprotein protein LCP5polymer35740864.41UniProt (P40079)
Pfam (PF04000)
Saccharomyces cerevisiae S288C
37LA
(ND)
Bud site selection protein 21polymer21424431.01UniProt (Q08492)
Pfam (PF08297)
Saccharomyces cerevisiae S288CU three protein 16,U3 small nucleolar RNA-associated protein 16,U3 snoRNA-associated protein 16
38MA
(NF)
40S ribosomal protein S13polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae S288CS27a,Small ribosomal subunit protein uS15,YS15
39NA
(NG)
40S ribosomal protein S14-Apolymer13714562.71UniProt (P06367)
Pfam (PF00411)
Saccharomyces cerevisiae S288CRP59A,Small ribosomal subunit protein uS11-A
40OA
(NH)
U3 small nucleolar RNA-associated protein 22polymer1237140660.11UniProt (P53254)
Pfam (PF03813)
Pfam (PF17403)
Pfam (PF17404)
Pfam (PF17405)
Pfam (PF17406)
Pfam (PF17407)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 22,U three protein 22
41PA
(NI)
Ribosomal RNA-processing protein 7polymer29734526.41UniProt (P25368)
Pfam (PF17799)
Pfam (PF12923)
Saccharomyces cerevisiae S288C
42QA
(NM)
Small ribosomal subunit protein eS1Apolymer25528798.51UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae S288C40S ribosomal protein S1-A,RP10A
43RA
(NN)
Protein BFR2polymer53461285.01UniProt (Q06631)
Pfam (PF13339)
Pfam (PF08164)
Saccharomyces cerevisiae S288CBrefeldin A resistance protein 2
44SA
(NQ)
40S ribosomal protein S27-Apolymer828893.41UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae S288CRP61,Small ribosomal subunit protein eS27-A,YS20
45TA
(NS)
Probable ATP-dependent RNA helicase DHR1polymer1267145171.41UniProt (Q04217)
Pfam (PF21010)
Pfam (PF07717)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF04408)
Saccharomyces cerevisiae S288CDEAH box RNA helicase DHR1,Extracellular mutant protein 16
46UA
(NV)
Exosome complex exonuclease RRP6polymer73384160.61UniProt (Q12149)
Pfam (PF08066)
Pfam (PF01612)
Pfam (PF00570)
Saccharomyces cerevisiae S288CRrp6p,Ribosomal RNA-processing protein 6
47VA
(OA)
rRNA biogenesis protein RRP5polymer1729193411.41UniProt (Q05022)
Pfam (PF00575)
Pfam (PF05843)
Saccharomyces cerevisiae S288CRibosomal RNA-processing protein 5,U3 small nucleolar RNA-associated protein RRP5,U3 snoRNA-associated protein RRP5
48WA
(OH)
40S ribosomal protein S12polymer14315488.61UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae S288C
49XA
(OU)
Ubiquitin-40S ribosomal protein S31polymer15217254.21UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)
Saccharomyces cerevisiae S288C
50YA
(SA)
Nucleolar protein 56polymer50456961.21UniProt (Q12460)
Pfam (PF08156)
Pfam (PF01798)
Saccharomyces cerevisiae S288CRibosome biosynthesis protein SIK1,Suppressor of I kappa b protein 1
51ZA
(SB)
Nucleolar protein 58polymer51157060.31UniProt (Q12499)
Pfam (PF08156)
Pfam (PF01798)
Saccharomyces cerevisiae S288CNucleolar protein 5
52AB, BB
(SC, SD)
rRNA 2'-O-methyltransferase fibrillarinpolymer32734525.42UniProt (P15646)
Pfam (PF01269)
Saccharomyces cerevisiae S288CHistone-glutamine methyltransferase,U3 small nucleolar RNA-associated protein NOP1,U3 snoRNA-associated protein NOP1
53CB, DB
(SE, SF)
13 kDa ribonucleoprotein-associated proteinpolymer12613582.92UniProt (P39990)
Pfam (PF01248)
Saccharomyces cerevisiae S288CSmall nuclear ribonucleoprotein-associated protein 1
54EB
(SG)
Ribosomal RNA-processing protein 9polymer57365147.01UniProt (Q06506)
Pfam (PF00400)
Saccharomyces cerevisiae S288C
55FB
(SH)
RNA 3'-terminal phosphate cyclase-like proteinpolymer36740220.61UniProt (Q08096)
Pfam (PF01137)
Pfam (PF05189)
Saccharomyces cerevisiae S288C
56GB
(SI)
Ribosome biogenesis protein BMS1polymer1183135792.31UniProt (Q08965)
Pfam (PF00004)
Pfam (PF08142)
Pfam (PF04950)
Saccharomyces cerevisiae S288C
57HB, IB
(SJ, SK)
Ribosomal RNA small subunit methyltransferase NEP1polymer25227936.52UniProt (Q06287)
Pfam (PF03587)
Saccharomyces cerevisiae S288C18S rRNA (pseudouridine(1189)-N1)-methyltransferase,18S rRNA Psi1189 methyltransferase,Essential for mitotic growth protein 1,Nucleolar essential protein 1
58JB
(SL)
rRNA-processing protein FCF1polymer18921650.71UniProt (Q05498)
Pfam (PF04900)
Saccharomyces cerevisiae S288CFAF1-copurifying factor 1
59KB
(SM)
U3 small nucleolar ribonucleoprotein protein IMP4polymer29033536.21UniProt (P53941)
Pfam (PF04427)
Saccharomyces cerevisiae S288CU3 snoRNP protein IMP4,Interacting with MPP10 protein 4
60LB
(SP)
U3 small nucleolar RNA-associated protein 20polymer2493287915.51UniProt (P35194)
Pfam (PF07539)
Pfam (PF20416)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 20,U three protein 20
61MB
(SQ)
rRNA-processing protein FCF2polymer21725689.21UniProt (Q12035)
Pfam (PF08698)
Saccharomyces cerevisiae S288CFAF1 copurifying factor 2
62NB
(SR)
40S ribosomal protein S23-Apolymer14516073.91UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae S288CRP37,S28,YS14
63OB
(SS)
U3 small nucleolar RNA-associated protein 14polymer899103269.71UniProt (Q04500)
Pfam (PF04615)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 14,U three protein 14
64PB
(ST)
Nucleolar complex protein 14polymer81094463.21UniProt (Q99207)
Pfam (PF04147)
Saccharomyces cerevisiae S288CU three protein 2,U3 small nucleolar RNA-associated protein 2,U3 snoRNA-associated protein 2
65QB
(SU)
Nucleolar complex protein 4polymer55263707.81UniProt (Q06512)
Pfam (PF03914)
Saccharomyces cerevisiae S288CU three protein 19,U3 small nucleolar RNA-associated protein 19,U3 snoRNA-associated protein 19
66RB
(SW)
Pre-rRNA-processing protein PNO1polymer27430380.61UniProt (Q99216)
Pfam (PF17903)
Pfam (PF22891)
Saccharomyces cerevisiae S288CPartner of NOB1,Ribosomal RNA-processing protein 20
67SB
(SY)
U3 small nucleolar RNA-associated protein 11polymer25029806.31UniProt (P34247)
Pfam (PF03998)
Saccharomyces cerevisiae S288CU3 snoRNA-associated protein 11,U three protein 11
68TB
(SZ)
Essential nuclear protein 1polymer48355207.41UniProt (P38333)
Pfam (PF05291)
Saccharomyces cerevisiae S288C
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains72
Total formula weight5037585.5
All*Total formula weight5037585.5
*Water molecules are not included.

247035

PDB entries from 2026-01-07

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