9MW5
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Envelope glycoprotein B | polymer | 727 | 82052.0 | 3 | UniProt (P08666) Pfam (PF17416) Pfam (PF17417) Pfam (PF00606) | Homo sapiens (human) | gB |
| 2 | D, E, F (D, E, F) | D1 Neutralizing Nanobody | polymer | 131 | 14454.9 | 3 | Homo sapiens (human) | ||
| 3 | G, H, I, J, K... (A, B, C) | SODIUM ION | non-polymer | 23.0 | 6 | Chemie (NA) | |||
| 4 | M, N, O, P, Q... (A, B, C, D, E...) | water | water | 18.0 | 5516 | Chemie (HOH) |
Sequence modifications
A, B, C: 28 - 730 (UniProt: P08666)
| PDB | External Database | Details |
|---|---|---|
| Ala 203 | Thr 198 | conflict |
| Gly 731 | - | expression tag |
| Gly 732 | - | expression tag |
| Gly 733 | - | expression tag |
| Ser 734 | - | expression tag |
| His 735 | - | expression tag |
| His 736 | - | expression tag |
| His 737 | - | expression tag |
| His 738 | - | expression tag |
| His 739 | - | expression tag |
| His 740 | - | expression tag |
| His 741 | - | expression tag |
| His 742 | - | expression tag |
| Gly 743 | - | expression tag |
| Ser 744 | - | expression tag |
| Asp 745 | - | expression tag |
| Tyr 746 | - | expression tag |
| Lys 747 | - | expression tag |
| Asp 748 | - | expression tag |
| Asp 749 | - | expression tag |
| Asp 750 | - | expression tag |
| Asp 751 | - | expression tag |
| Lys 752 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 289520.9 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 137.9 | |
| All* | Total formula weight | 289658.9 |
