9MU7
Structure of a native Drosophila melanogaster Pol II Elongation Complex with a well-defined Rpb4/Rpb7 stalk
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA-directed RNA polymerase II subunit RPB1 | polymer | 1470 | 166420.4 | 1 | UniProt (P04052) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) | Drosophila melanogaster (fruit fly) | RNA polymerase II subunit B1,DNA-directed RNA polymerase III largest subunit,RNA polymerase II subunit A |
| 2 | B (B) | DNA-directed RNA polymerase II subunit RPB2 | polymer | 1164 | 132640.1 | 1 | UniProt (P08266) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) Pfam (PF04563) Pfam (PF04561) | Drosophila melanogaster (fruit fly) | RNA polymerase II subunit 2,RNA polymerase II subunit B2,DNA-directed RNA polymerase II 140 kDa polypeptide,RNA polymerase II subunit B |
| 3 | C (C) | DNA-directed RNA polymerase II subunit RPB3 | polymer | 269 | 30676.2 | 1 | UniProt (O97183) Pfam (PF01193) Pfam (PF01000) | Drosophila melanogaster (fruit fly) | RNA polymerase II p33 subunit,RNA polymerase II subunit C |
| 4 | D (D) | DNA-directed RNA polymerase II subunit Rpb4 | polymer | 130 | 15180.1 | 1 | UniProt (Q9VEA5) Pfam (PF03874) | Drosophila melanogaster (fruit fly) | RNA polymerase II subunit D |
| 5 | E (F) | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | polymer | 84 | 9736.5 | 1 | UniProt (Q24320) Pfam (PF01192) | Drosophila melanogaster (fruit fly) | RNA polymerases I,II,and III subunit ABC2,RNA polymerase II,I and III subunit F,RPB6 homolog |
| 6 | F (G) | DNA-directed RNA polymerase II subunit RPB7 | polymer | 173 | 19127.2 | 1 | UniProt (Q9VFB5) Pfam (PF03876) Pfam (PF00575) | Drosophila melanogaster (fruit fly) | |
| 7 | G (H) | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 147 | 16946.1 | 1 | UniProt (Q9VNZ3) Pfam (PF03870) | Drosophila melanogaster (fruit fly) | |
| 8 | H (I) | DNA-directed RNA polymerase II subunit RPB9 | polymer | 116 | 13786.6 | 1 | UniProt (P36958) Pfam (PF02150) Pfam (PF01096) | Drosophila melanogaster (fruit fly) | RNA polymerase II subunit B9,DNA-directed RNA polymerase II 15.1 kDa polypeptide,RNA polymerase II subunit I |
| 9 | I (J) | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | polymer | 67 | 7671.1 | 1 | UniProt (Q9VC49) Pfam (PF01194) | Drosophila melanogaster (fruit fly) | RNA polymerases I,II,and III subunit ABC5,RNA polymerase II,I and III subunit L,RPB10 homolog |
| 10 | J (K) | DNA-directed RNA polymerase II subunit RPB11 | polymer | 116 | 13288.2 | 1 | UniProt (Q9VJE4) Pfam (PF13656) | Drosophila melanogaster (fruit fly) | RNA polymerase II subunit B11,DNA-directed RNA polymerase II 13.3 kDa polypeptide,DNA-directed RNA polymerase II subunit J |
| 11 | K (L) | DNA-directed RNA polymerase II subunit RPB12 | polymer | 46 | 5647.7 | 1 | UniProt (Q6IGE3) Pfam (PF03604) | Drosophila melanogaster (fruit fly) | HDC06513,IP17848p,Rpb12 |
| 12 | L (R) | RNA | polymer | 10 | 3247.1 | 1 | Drosophila melanogaster (fruit fly) | ||
| 13 | M (T) | Template DNA | polymer | 50 | 15134.7 | 1 | Drosophila melanogaster (fruit fly) | ||
| 14 | N (N) | Non-template DNA | polymer | 39 | 12170.1 | 1 | Drosophila melanogaster (fruit fly) | ||
| 15 | O (E) | DNA-directed RNA polymerase II subunit RPB5 | polymer | 210 | 24518.3 | 1 | UniProt (Q7JZF5) Pfam (PF03871) Pfam (PF01191) | Drosophila melanogaster (fruit fly) | |
| 16 | P, Q, R, S, T... (A, B, C, I, J...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 15 |
| Total formula weight | 486190.4 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 523.3 | |
| All* | Total formula weight | 486713.6 |
