9MQG
RM017 Fab in complex with Apex-GT6.2 trimer and RM20A3 Fab
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | RM017 Fab heavy chain | polymer | 235 | 25373.3 | 1 | Macaca mulatta | ||
| 2 | B (L) | RM017 Fab light chain | polymer | 220 | 24141.8 | 1 | Macaca mulatta | ||
| 3 | C, E, H (G, J, N) | RM20A3 Fab light chain | polymer | 128 | 13508.8 | 3 | Macaca mulatta | ||
| 4 | D, F, G (I, K, M) | RM20A3 Fab heavy chain | polymer | 125 | 13511.1 | 3 | Macaca mulatta | ||
| 5 | I, K, M (A, C, D) | Envelope glycoprotein gp120 | polymer | 473 | 53163.4 | 3 | UniProt (by SIFTS) (Q2N0S6) | Human immunodeficiency virus 1 | |
| 6 | J, L, N (B, E, F) | Transmembrane protein gp41 | polymer | 153 | 17134.3 | 3 | UniProt (Q2N0S6) UniProt (by SIFTS) (A0ABF7PQ88) | Human immunodeficiency virus 1 | TM, Glycoprotein 41, gp41 |
| 7 | O, Q, S, T, U... (O, Q, S, T, U...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 8 | In PDB GlyTouCan (G42666HT) | |||
| 8 | P (P) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 9 | R (R) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42227JK) | |||
| 10 | W (W) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 11 | AA, AB, BA, BB, CA... (A, D, B, F, C...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) |
Sequence modifications
B, E, F: 512 - 664 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Ser 519 | Phe 516 | conflict |
| Pro 559 | Ile 556 | conflict |
| Pro 561 | Ala 558 | conflict |
| Asp 568 | Leu 565 | conflict |
| His 570 | Val 567 | conflict |
| His 585 | Arg 582 | conflict |
| Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 341468.0 | |
| Branched | Number of molecules | 11 |
| Total formula weight | 5803.4 | |
| Non-Polymers* | Number of molecules | 39 |
| Total formula weight | 8627.1 | |
| All* | Total formula weight | 355898.5 |
