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9MQ4

Damaged 70S ribosome with PrfH bound

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1)
23S ribosomal RNApolymer2903941526.41Escherichia coli
2B
(2)
16S ribosomal RNApolymer1534497405.01GenBank (1162858853)Escherichia coli
3C
(4)
5S ribosomal RNApolymer12038790.11GenBank (1273279017)Escherichia coli
4D, E
(5, 6)
P-tRNA, E-tRNApolymer7724802.82GenBank (1848934315)Escherichia coli
5F
(7)
mRNApolymer258133.01Escherichia coli
6G
(A)
Peptide chain release factor Hpolymer23126394.11Pfam (PF00472)
UniProt (by SIFTS) (F0IC05)
Escherichia coli
7H
(B)
50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
Escherichia coliLarge ribosomal subunit protein uL2
8I
(C)
50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
Escherichia coliLarge ribosomal subunit protein uL3
9J
(D)
Large ribosomal subunit protein uL4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
Escherichia coli50S ribosomal protein L4
10K
(E)
Large ribosomal subunit protein uL5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
Escherichia coli50S ribosomal protein L5
11L
(F)
Large ribosomal subunit protein uL6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
Escherichia coli50S ribosomal protein L6
12M
(G)
Large ribosomal subunit protein bL9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
Escherichia coli50S ribosomal protein L9
13N
(H)
50S ribosomal protein L10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)
Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
14O
(I)
50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
Escherichia coliLarge ribosomal subunit protein uL11
15P
(J)
Large ribosomal subunit protein uL13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
Escherichia coli50S ribosomal protein L13
16Q
(K)
Large ribosomal subunit protein uL14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
Escherichia coli50S ribosomal protein L14
17R
(L)
Large ribosomal subunit protein uL15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
Escherichia coli50S ribosomal protein L15
18S
(M)
50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
Escherichia coliLarge ribosomal subunit protein uL16
19T
(N)
Large ribosomal subunit protein bL17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
Escherichia coli50S ribosomal protein L17
20U
(O)
Large ribosomal subunit protein uL18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
Escherichia coli50S ribosomal protein L18
21V
(P)
Large ribosomal subunit protein bL19polymer11513159.31UniProt (P0A7K8)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
Escherichia coli
22W
(Q)
50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
Escherichia coli
23X
(R)
Large ribosomal subunit protein bL21polymer10311586.41UniProt (Q1R6F0)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
Escherichia coli50S ribosomal protein L21
24Y
(S)
Large ribosomal subunit protein uL22polymer11012253.41UniProt (Q1R610)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
Escherichia coli50S ribosomal protein L22
25Z
(T)
50S ribosomal protein L23polymer10011222.21UniProt (C3SQV2)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
Escherichia coli
26AA
(U)
50S ribosomal protein L24polymer10411339.31UniProt (C3SQZ7)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
Escherichia coli
27BA
(V)
Large ribosomal subunit protein bL25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
Escherichia coli
28CA
(W)
Large ribosomal subunit protein bL27polymer859146.51UniProt (P0A7M0)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
Escherichia coli
29DA
(X)
50S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
Escherichia coli
30EA
(Y)
Large ribosomal subunit protein uL29polymer637286.51UniProt (C3SQY2)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
Escherichia coli
31FA
(Z)
50S ribosomal protein L30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
Escherichia coli
32GA
(a)
50S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
Escherichia coliLarge ribosomal subunit protein bL31-A
33HA
(b)
50S ribosomal protein L32polymer576463.41UniProt (C3TE02)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
Escherichia coli
34IA
(c)
50S ribosomal protein L33polymer556388.61UniProt (C3SME7)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
Escherichia coli
35JA
(d)
50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
Escherichia coli
36KA
(e)
50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
37LA
(f)
50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
Escherichia coli
38MA
(g)
30S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
Escherichia coli
39NA
(h)
30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
Escherichia coli
40OA
(i)
30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
Escherichia coli
41PA
(j)
Small ribosomal subunit protein uS5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
Escherichia coli 0.119730S ribosomal protein S5
42QA
(k)
30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
Escherichia coliSmall ribosomal subunit protein bS6
43RA
(l)
30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
Escherichia coliSmall ribosomal subunit protein uS7
44SA
(m)
Small ribosomal subunit protein uS8polymer13014146.61UniProt (C3SR12)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
Escherichia coli
45TA
(n)
Small ribosomal subunit protein uS9polymer13014886.31UniProt (C3SRY2)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
Escherichia coli
46UA
(o)
Small ribosomal subunit protein uS10polymer10311755.61UniProt (C3SQT7)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
Escherichia coli
47VA
(p)
30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
Escherichia coli
48WA
(q)
Small ribosomal subunit protein uS12polymer12413814.21UniProt (C3SQR7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
Escherichia coli
49XA
(r)
30S ribosomal protein S13polymer11813128.51UniProt (A0A7U9IV78)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
Escherichia coli
50YA
(s)
Small ribosomal subunit protein uS14polymer10111606.61UniProt (A0A2X1PQW4)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
Escherichia coli
51ZA
(t)
Small ribosomal subunit protein uS15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
Escherichia coli
52AB
(u)
30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
Escherichia coli
53BB
(v)
Small ribosomal subunit protein uS17polymer849724.51UniProt (C3SQY7)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
Escherichia coli
54CB
(w)
30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
Escherichia coli
55DB
(x)
Small ribosomal subunit protein uS19polymer9210455.41UniProt (C3SQW2)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
Escherichia coli
56EB
(y)
30S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
Escherichia coli
57FB
(z)
30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
Escherichia coli
58AC, AD, AE, AF, AG...
(1, 2, b, f, i...)
MAGNESIUM IONnon-polymer24.3439Chemie (MG)
59CS, YR
(f, a)
ZINC IONnon-polymer65.42Chemie (ZN)
60FS
(B)
waterwater18.02Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2254496.4
Non-Polymers*Number of molecules441
Total formula weight10800.7
All*Total formula weight2265297.2
*Water molecules are not included.

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PDB entries from 2025-06-11

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