9ML8
Crystal structure of the SARS-CoV-2 RBD in complex with the rabbit M8b-B1 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Spike protein S1 | polymer | 212 | 24004.9 | 4 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2 2019-nCoV COVID-19 virus) | |
| 2 | E, G, I, K (E, H, M, P) | M8b-B1 heavy chain | polymer | 235 | 24956.0 | 4 | Oryctolagus cuniculus (rabbit) | ||
| 3 | F, H, J, L (F, L, N, Q) | M8b-B1 light chain | polymer | 217 | 23367.7 | 4 | Oryctolagus cuniculus (rabbit) | ||
| 4 | M, N, O, P (G, I, J, K) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 4 | In PDB GlyTouCan (G42666HT) | |||
| 5 | Q, R, S, T, U... (A, C, D, F, L...) | SULFATE ION | non-polymer | 96.1 | 7 | Chemie (SO4) | |||
| 6 | AA, BA, CA, DA, EA... (D, E, F, H, L...) | water | water | 18.0 | 755 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 328 - 533 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| His 534 | - | expression tag |
| His 535 | - | expression tag |
| His 536 | - | expression tag |
| His 537 | - | expression tag |
| His 538 | - | expression tag |
| His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 289314.8 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 1697.6 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 672.4 | |
| All* | Total formula weight | 291684.9 |
