9MKB

Structure of the bacteriophage T4 portal-neck-tail complex

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, DS, KS, PR, VR... (0, k, l, m, n...)	gp14, neck protein	polymer	256	29597.8	6	UniProt (P11111)	Escherichia phage T4	Gene product 14,gp14
2	AC, AE, AF, AG, AH... (1, 2, 3, 4, 5...)	gp18, tail sheath protein	polymer	659	71348.6	138	UniProt (A0A7S9SVW9)	Escherichia phage T4
3	AA, AD, AI, AJ, AK... (6, 7, 8, 9, AA...)	gp19, tail tube protein	polymer	163	18479.6	126	UniProt (A0A7S9SVI2)	Escherichia phage T4
4	BK, BN, CP, CQ, DE... (A, B, C, D, E...)	gpwac, fibritin	polymer	487	51909.2	36	UniProt (P10104)	Escherichia phage T4	Collar protein,Whisker antigen control protein
5	DC, EC, GC, IC, JC... (A0, A1, A2, A3, Av...)	gp20, portal protein	polymer	524	61117.1	12	UniProt (A0A7S9SW10)	Escherichia phage T4	gp20
6	AB, BB, CB, DB, EB... (A4, A5, A7, A8, A9...)	gp23, major capsid protein	polymer	521	56074.2	30	UniProt (P04535)	Escherichia phage T4	Gene product 23,Major head protein,gp23
7	FC, GB, HC, LB, MB... (A6, AY, Aa, Ab, Al...)	gp13, neck protein	polymer	309	34772.2	12	UniProt (P11110)	Escherichia phage T4	Gene product 13,gp13
8	BT, FT, JT, NS, US... (AB, q, r, s, t...)	gp15, tail terminator protein	polymer	272	31587.5	6	UniProt (A0A7S9XHN5)	Escherichia phage T4
9	NT, RT, ST, TT, UT... (AC, v, w, x, y...)	gp3, tube terminator protein	polymer	176	19723.1	6	UniProt (A0A7S9SU76)	Escherichia phage T4
10	LA, MA, NA, OA, PA (AQ, AR, AS, AT, AU)	Hoc, highly immunogenic outer capsid protein	polymer	376	40416.5	5	UniProt (A0A7S9SW08)	Escherichia phage T4
11	QC, RC, SC, TC, UC... (BN, BO, BP, BQ, BR...)	Soc, small outer capsid protein	polymer	80	9129.1	10	UniProt (A0A7S9SVQ6)	Escherichia phage T4	Soc
12	CK, DK, EK, FK, GK... (S0, S1, S2, S3, S4...)	gp12, short tail fiber protein	polymer	527	56253.9	18	UniProt (P10930)	Escherichia phage T4	Gene product 12,gp12
13	AL, BL, CL, DL, EL... (T1, T2, T3, T4, T5...)	gp9, baseplate wedge tail fiber connector	polymer	288	31024.7	18	UniProt (A0A7S9SWG4)	Escherichia phage T4
14	AM, BM, CM, DM, EM... (UL, UM, UN, Up, Uq...)	gp11, baseplate wedge protein	polymer	219	23725.5	18	UniProt (A0A7S9SW18)	Escherichia phage T4
15	AN, IM, JM, KM, LM... (WI, WJ, WK, Wj, Wk...)	gp10, baseplate wedge protein	polymer	602	66281.7	18	UniProt (P10928)	Escherichia phage T4	Gene product 10,gp10
16	CN, DN, EN, FN, GN... (YC, YX, YY, Yc, Yx...)	gp7, baseplate wedge protein	polymer	1032	119336.5	6	UniProt (P19061)	Escherichia phage T4	Gene product 7,gp7
17	JN, KN, LN, MN, NN... (ZD, ZE, ZZ, Za, Zb...)	gp8, baseplate wedge protein	polymer	334	38041.7	12	UniProt (A0A7S9SVZ9)	Escherichia phage T4
18	KP, LP, MP, OP, PP... (eB, eU, eW, f9, fA...)	gp6, baseplate wedge protein	polymer	660	74492.6	12	UniProt (P19060)	Escherichia phage T4	Gene product 6,gp6
19	AQ, YP, ZP (gE, gG, gH)	gp5, baseplate central spike protein	polymer	575	63183.7	3	UniProt (A0A7S9SVH6)	Escherichia phage T4	Pre-Gp5,Peptidoglycan hydrolase gp5
20	BQ (gd)	gp5.4, tip of the central spike	polymer	97	10233.7	1	UniProt (A0A7S9SVS3)	Escherichia phage T4
21	IR, JR, KR (iC, iD, iF)	gp27, baseplate hub protein	polymer	391	44431.1	3	UniProt (A0A7S9XHP4)	Escherichia phage T4
22	MR, NR, OR (ja, jb, jc)	gp29, tape measure protein	polymer	590	64485.5	3	UniProt (P13337)	Escherichia phage T4	TMP,Gene product 29,gp29,Tail length regulator
23	QR, RR, SR, TR, UR... (k3, k4, k7, k8, kV...)	gp53, baseplate wedge protein	polymer	196	22990.9	6	UniProt (A0A7S9XI21)	Escherichia phage T4
24	AS, BS, CS, ES, YR... (m1, m2, m5, m6, mT...)	gp25, baseplate protein	polymer	132	15111.1	6	UniProt (A0A7S9SW44)	Escherichia phage T4
25	GS, HS, IS, JS, LS... (o0, o1, o2, o6, pA...)	gp48, baseplate protein	polymer	364	39770.3	6	UniProt (A0A7S9SVT9)	Escherichia phage T4
26	OS, PS, QS, RS, SS... (q3, q4, q5, q7, q8...)	gp54, baseplate protein	polymer	320	35001.2	6	UniProt (P13341)	Escherichia phage T4	Gene product 54,gp54
27	AT, VS, WS, XS, YS... (rc, rd, re, rf, rg...)	unassigned peptide A	polymer	25	2145.6	6		Escherichia phage T4
28	CT, DT, ET (sQ, sT, sU)	unassigned peptide B	polymer	18	1549.9	3		Escherichia phage T4
29	GT, HT, IT (tS, tX, tY)	unassigned peptide C	polymer	10	869.1	3		Escherichia phage T4
30	KT, LT, MT (uR, uV, uW)	unassigned peptide D	polymer	7	613.7	3		Escherichia phage T4
31	OT, PT, QT (vZ, va, vb)	unassigned peptide E	polymer	9	784.0	3		Escherichia phage T4
32	AU, VT, WT, XT, YT... (Sv, S0, S1, S4, SA...)	ZINC ION	non-polymer		65.4	6	Chemie (ZN)

Sequence modifications

1, 2, 3, 4, 5, AD, AK, AL, AM, AN, AO, AP, B1, B2, B3, B4, B5, B6, B7, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx, By, Bz, K0, K1, K2, K3, K4, K5, K6, K7, K8, K9, L0, L1, L2, L3, L4, L5, L6, L7, L8, L9, LS, LU, LV, LW, LX, LY, LZ, La, Lb, Lc, Ld, Le, Lx, Lz, M0, M1, M2, M3, M4, M5, M6, M7, M8, M9, MS, MU, MV, MW, MX, MY, MZ, Ma, Mb, Mc, Md, Me, Mx, Mz, NX, NZ, Na, Nb, Nc, Nd, Ne, Nf, Ng, Nh, Ni, Nj, Nx, Nz, b0, b3, b4, b5, b6, b7, b8, b9, bN, bO, bP, bQ, bR, bY, cA, cB, cC, cD, cE, cF, cG, cH, cI, cJ, cK, cL, cM, cN, cO, cP, dS, dT, dU, dV, dW, dZ: 1 - 659 (UniProt: A0A7S9SVW9)

PDB	External Database	Details
Asn 109	Ser 109	conflict
Gly 301	Glu 301	conflict
Val 399	Ala 399	conflict

Contents of the asymmetric unit

Polymers	Number of chains	541
	Total formula weight	24140670.8
Non-Polymers*	Number of molecules	6
	Total formula weight	392.5
All*	Total formula weight	24141063.3

*Water molecules are not included.