9MIB
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, G, M (G, J, O) | RM20A3 heavy chain Fv | polymer | 125 | 13511.1 | 3 | Macaca mulatta | ||
| 2 | B, H, N (I, M, Q) | RM20A3 light chain Fv | polymer | 128 | 13508.8 | 3 | Macaca mulatta | ||
| 3 | C, I, O (A, C, E) | GT1.1 v4.1 SOSIP gp120 | polymer | 509 | 57275.5 | 3 | Pfam (PF00516) UniProt (by SIFTS) (Q2N0S6) | Human immunodeficiency virus 1 | |
| 4 | D, J, P (B, D, F) | Envelope glycoprotein gp160 | polymer | 153 | 17146.5 | 3 | UniProt (Q2N0S6) Pfam (PF00517) UniProt (by SIFTS) (D0PUM0) | Human immunodeficiency virus 1 | |
| 5 | E, K, Q (H, K, P) | 206-9C09 heavy chain Fv | polymer | 123 | 13801.4 | 3 | Homo sapiens | ||
| 6 | F, L, R (L, N, R) | 206-9C09 kappa chain Fv | polymer | 103 | 11358.6 | 3 | Homo sapiens | ||
| 7 | BA, CA, EA, GA, HA... (b, c, e, g, h...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 18 | In PDB GlyTouCan (G42666HT) | |||
| 8 | AA, DA, FA, KA, NA... (a, d, f, k, n...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 9 | In PDB GlyTouCan (G15407YE) | |||
| 9 | IA, SA, Y (i, s, Y) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 3 | In PDB GlyTouCan (G42984ZU) | |||
| 10 | AB, BB, CB, DB, EB... (B, C, D, E, F...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) |
Sequence modifications
B, D, F: 512 - 664 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Pro 559 | Ile 556 | conflict |
| Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 379805.6 | |
| Branched | Number of molecules | 30 |
| Total formula weight | 16137.0 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 3318.1 | |
| All* | Total formula weight | 399260.7 |
