9LVI
Cryo-EM structure of SARS-CoV-2 spike protein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1275 | 141228.4 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, E, F, G, H... (D, E, F, G, H...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 3 | AA, BA, CA, DA, EA... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 32 | Chemie (NAG) PubChem (24139) |
Sequence modifications
A, B, C: 14 - 1211 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met -24 | - | initiating methionine |
| Leu -23 | - | expression tag |
| Leu -22 | - | expression tag |
| Val -21 | - | expression tag |
| Asn -20 | - | expression tag |
| Gln -19 | - | expression tag |
| Ser -18 | - | expression tag |
| His -17 | - | expression tag |
| Gln -16 | - | expression tag |
| Gly -15 | - | expression tag |
| Phe -14 | - | expression tag |
| Asn -13 | - | expression tag |
| Lys -12 | - | expression tag |
| Glu -11 | - | expression tag |
| His -10 | - | expression tag |
| Thr -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Lys -7 | - | expression tag |
| Met -6 | - | expression tag |
| Val -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Ala -3 | - | expression tag |
| Ile -2 | - | expression tag |
| Val -1 | - | expression tag |
| Leu 0 | - | expression tag |
| Tyr 1 | - | expression tag |
| Val 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Leu 4 | - | expression tag |
| Ala 5 | - | expression tag |
| Ala 6 | - | expression tag |
| Ala 7 | - | expression tag |
| Ala 8 | - | expression tag |
| His 9 | - | expression tag |
| Ser 10 | - | expression tag |
| Ala 11 | - | expression tag |
| Phe 12 | - | expression tag |
| Ala 13 | - | expression tag |
| Glu 607 | Gln 607 | conflict |
| Gly 682 | Arg 682 | conflict |
| Ser 683 | Arg 683 | conflict |
| Ser 685 | Arg 685 | conflict |
| Pro 986 | Lys 986 | variant |
| Pro 987 | Val 987 | variant |
| Gly 1212 | - | expression tag |
| Gly 1213 | - | expression tag |
| Ser 1214 | - | expression tag |
| Gly 1215 | - | expression tag |
| Tyr 1216 | - | expression tag |
| Ile 1217 | - | expression tag |
| Pro 1218 | - | expression tag |
| Glu 1219 | - | expression tag |
| Ala 1220 | - | expression tag |
| Pro 1221 | - | expression tag |
| Arg 1222 | - | expression tag |
| Asp 1223 | - | expression tag |
| Gly 1224 | - | expression tag |
| Gln 1225 | - | expression tag |
| Ala 1226 | - | expression tag |
| Tyr 1227 | - | expression tag |
| Val 1228 | - | expression tag |
| Arg 1229 | - | expression tag |
| Lys 1230 | - | expression tag |
| Asp 1231 | - | expression tag |
| Gly 1232 | - | expression tag |
| Glu 1233 | - | expression tag |
| Trp 1234 | - | expression tag |
| Val 1235 | - | expression tag |
| Leu 1236 | - | expression tag |
| Leu 1237 | - | expression tag |
| Ser 1238 | - | expression tag |
| Thr 1239 | - | expression tag |
| Phe 1240 | - | expression tag |
| Leu 1241 | - | expression tag |
| Gly 1242 | - | expression tag |
| His 1243 | - | expression tag |
| His 1244 | - | expression tag |
| His 1245 | - | expression tag |
| His 1246 | - | expression tag |
| His 1247 | - | expression tag |
| His 1248 | - | expression tag |
| His 1249 | - | expression tag |
| His 1250 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 423685.2 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5092.8 | |
| Non-Polymers* | Number of molecules | 32 |
| Total formula weight | 7078.7 | |
| All* | Total formula weight | 435856.7 |
