9LK5
The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, W (A, a) | Photosystem II protein D1 | polymer | 353 | 38961.3 | 2 | UniProt (P83755) Pfam (PF00124) | Arabidopsis thaliana (thale cress) | PSII D1 protein,Photosystem II Q(B) protein |
2 | B, X (B, b) | Photosystem II CP47 reaction center protein | polymer | 508 | 56091.8 | 2 | UniProt (P56777) Pfam (PF00421) | Arabidopsis thaliana (thale cress) | PSII 47 kDa protein,Protein CP-47 |
3 | C, Y (C, c) | Photosystem II CP43 reaction center protein | polymer | 473 | 51915.5 | 2 | UniProt (P56778) Pfam (PF00421) | Arabidopsis thaliana (thale cress) | PSII 43 kDa protein,Protein CP-43 |
4 | D, Z (D, d) | Photosystem II D2 protein | polymer | 353 | 39575.3 | 2 | UniProt (P56761) Pfam (PF00124) | Arabidopsis thaliana (thale cress) | PSII D2 protein,Photosystem Q(A) protein |
5 | AA, E (E, e) | Cytochrome b559 subunit alpha | polymer | 83 | 9393.5 | 2 | UniProt (P56779) Pfam (PF00283) Pfam (PF00284) | Arabidopsis thaliana (thale cress) | PSII reaction center subunit V |
6 | BA, F (F, f) | Cytochrome b559 subunit beta | polymer | 39 | 4428.2 | 2 | UniProt (P62095) Pfam (PF00283) | Arabidopsis thaliana (thale cress) | PSII reaction center subunit VI |
7 | CA, G, N, RA (G, N, g, n) | Chlorophyll a-b binding protein 2, chloroplastic | polymer | 267 | 28251.0 | 4 | UniProt (P0CJ48) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | Chlorophyll a-b protein 165,CAB-165,LHCII type I CAB-2 |
8 | DA, H (H, h) | Photosystem II reaction center protein H | polymer | 73 | 7706.9 | 2 | UniProt (P56780) Pfam (PF00737) | Arabidopsis thaliana (thale cress) | PSII-H,Photosystem II 10 kDa phosphoprotein |
9 | EA, I (I, i) | Photosystem II reaction center protein I | polymer | 36 | 4170.9 | 2 | UniProt (P62100) Pfam (PF02532) | Arabidopsis thaliana (thale cress) | PSII-I,PSII 4.8 kDa protein |
10 | FA, J (J, j) | Photosystem II reaction center protein J | polymer | 40 | 4117.8 | 2 | UniProt (P56781) Pfam (PF01788) | Arabidopsis thaliana (thale cress) | PSII-J |
11 | GA, K (K, k) | Photosystem II reaction center protein K | polymer | 61 | 6977.4 | 2 | UniProt (P56782) Pfam (PF02533) | Arabidopsis thaliana (thale cress) | PSII-K |
12 | HA, L (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4471.1 | 2 | UniProt (P60129) Pfam (PF02419) | Arabidopsis thaliana (thale cress) | PSII-L |
13 | IA, M (M, m) | Photosystem II reaction center protein M | polymer | 34 | 3783.5 | 2 | UniProt (P62109) Pfam (PF05151) | Arabidopsis thaliana (thale cress) | PSII-M |
14 | JA, O (O, o) | Oxygen-evolving enhancer protein 1-1, chloroplastic | polymer | 332 | 35180.3 | 2 | UniProt (P23321) Pfam (PF01716) | Arabidopsis thaliana (thale cress) | OEE1,33 kDa subunit of oxygen evolving system of photosystem II,33 kDa thylakoid membrane protein,Manganese-stabilizing protein 1,MSP-1,OEC 33 kDa subunit |
15 | LA, P (S, s) | Chlorophyll a-b binding protein CP26, chloroplastic | polymer | 280 | 30187.6 | 2 | UniProt (Q9XF89) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | LHCB5,LHCIIc,Light-harvesting complex II protein 5 |
16 | MA, Q (T, t) | Photosystem II reaction center protein T | polymer | 33 | 3825.6 | 2 | UniProt (P61839) Pfam (PF01405) | Arabidopsis thaliana (thale cress) | PSII-T |
17 | NA, R (U, u) | Photosystem II 5 kDa protein, chloroplastic | polymer | 103 | 11042.9 | 2 | UniProt (Q39195) | Arabidopsis thaliana (thale cress) | PSII-T,Nuclear encoded psbT,PsbTn |
18 | OA, S (W, w) | Photosystem II reaction center W protein, chloroplastic | polymer | 133 | 13685.8 | 2 | UniProt (Q39194) Pfam (PF07123) | Arabidopsis thaliana (thale cress) | PSII 6.1 kDa protein |
19 | PA, T (X, x) | (thale cress) hypothetical protein | polymer | 116 | 11826.0 | 2 | UniProt (A0A7G2E9B1) Pfam (PF06596) | Arabidopsis thaliana (thale cress) | |
20 | SA, U (Y, y) | Chlorophyll a-b binding protein 2.2, chloroplastic | polymer | 265 | 28644.4 | 2 | UniProt (Q9S7J7) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | Photosystem II light harvesting complex gene 2.2,Protein LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2.2 |
21 | QA, V (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6569.8 | 2 | UniProt (P56790) Pfam (PF01737) | Arabidopsis thaliana (thale cress) | PSII-Z |
22 | KA, TA (r, R) | Chlorophyll a-b binding protein CP29.3, chloroplastic | polymer | 286 | 31297.5 | 2 | UniProt (Q9S7W1) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | LHCB4.3,LHCII protein 4.3 |
23 | AJ, AL, BD, BG, BI... (d, s, D, Y, c...) | CHLOROPHYLL A | non-polymer | 893.5 | 154 | Chemie (CLA) | |||
24 | CD, TG, UG, WA (D, a, A) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
25 | BJ, CK, DK, FD, GE... (d, h, k, D, H...) | BETA-CAROTENE | non-polymer | 536.9 | 20 | Chemie (BCR) | |||
26 | BC, CH, EK, KE, UI... (B, b, l, L, c...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) | |||
27 | AB, ZG (A, a) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
28 | AC, BB, CC, GJ, KD... (B, A, d, D, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) | |||
29 | AH, CB (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
30 | BH, DF, EC, FJ, JD... (b, S, C, d, D...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
31 | AI, AK, CF, CN, DC... (b, g, N, y, B...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 28 | Chemie (LHG) | |||
32 | AD, OL, TI, VF, WI... (C, s, c, S) | DECYL-BETA-D-MALTOPYRANOSIDE | non-polymer | 482.6 | 6 | Chemie (DMU) | |||
33 | CJ, GD (d, D) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 2 | Chemie (PL9) | |||
34 | HJ, LD (f, F) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
35 | AG, AM, BL, BM, CL... (Y, n, s, S, g...) | CHLOROPHYLL B | non-polymer | 907.5 | 50 | Chemie (CHL) | |||
36 | AE, AF, AN, BE, BN... (G, N, y, n, s...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 18 | Chemie (LUT) | |||
37 | BK, CE, FE, LM, RN... (g, G, y, R, r...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 8 | Chemie (XAT) | |||
38 | BF, DE, DN, JM, ML... (N, G, R, n, s...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 10 | Chemie (NEX) | |||
39 | QL, XF (w, W) | RRR-ALPHA-TOCOPHERYLQUINONE | non-polymer | 446.7 | 2 | Chemie (VTQ) |
Sequence modifications
r, R: 1 - 276 (UniProt: Q9S7W1)
PDB | External Database | Details |
---|---|---|
Gly 277 | - | expression tag |
Gly 278 | - | expression tag |
Gly 279 | - | expression tag |
Gly 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
His 286 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 46 |
Total formula weight | 920710.2 | |
Non-Polymers* | Number of molecules | 338 |
Total formula weight | 270221.1 | |
All* | Total formula weight | 1190931.2 |