9LH2
Crystal structure of SARS-CoV-2 spike receptor-binding domain (Delta) in complex with pH-dependent nanobody MNb-11.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, C) | Spike protein S1 | polymer | 218 | 24573.7 | 2 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
| 2 | B, C (B, D) | MNb-11 | polymer | 134 | 15195.7 | 2 | Vicugna pacos | ||
| 3 | E, F (A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 4 | G, H, I, J (A, B, D, C) | water | water | 18.0 | 290 | Chemie (HOH) |
Sequence modifications
A, C: 320 - 537 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Arg 452 | Leu 452 | variant |
| Lys 478 | Thr 478 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 79538.8 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 442.4 | |
| All* | Total formula weight | 79981.2 |
