9LE7
Coordinates of Cryo-EM structure of the Arabidopsis thaliana C4S4M4-type PSII supercomplex
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, TA, VA (5, 7, 9, AA) | Chlorophyll a-b binding protein, chloroplastic | polymer | 266 | 28193.9 | 4 | UniProt (A0A654EYS2) Pfam (PF00504) UniProt (by SIFTS) (Q39142) | Arabidopsis thaliana (thale cress) | |
| 2 | B, UA (6, 0) | Chlorophyll a-b binding protein 3, chloroplastic | polymer | 243 | 26453.0 | 2 | UniProt (Q9S7M0) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | Light-harvesting chlorophyll B-binding protein 3,LHCB3*1,Lhcb3 |
| 3 | D, WA (8, AB) | Chlorophyll a-b binding protein, chloroplastic | polymer | 212 | 23198.3 | 2 | UniProt (A0A178WK60) | Arabidopsis thaliana (thale cress) | |
| 4 | E, PB, W, XA (B, b, v, BE) | Photosystem II CP47 reaction center protein | polymer | 508 | 56091.8 | 4 | UniProt (P56777) Pfam (PF00421) | Arabidopsis thaliana (thale cress) | PSII 47 kDa protein,Protein CP-47 |
| 5 | F, QB, X, YA (D, d, 2, BG) | Photosystem II D2 protein | polymer | 352 | 39444.1 | 4 | UniProt (P56761) Pfam (PF00124) | Arabidopsis thaliana (thale cress) | PSII D2 protein,Photosystem Q(A) protein |
| 6 | G, RB, Y, ZA (E, e, 3, BH) | Cytochrome b559 subunit alpha | polymer | 83 | 9393.5 | 4 | UniProt (P56779) Pfam (PF00283) Pfam (PF00284) | Arabidopsis thaliana (thale cress) | PSII reaction center subunit V |
| 7 | AB, H, SB, Z (F, f, 4, BI) | Cytochrome b559 subunit beta | polymer | 39 | 4428.2 | 4 | UniProt (P62095) Pfam (PF00283) | Arabidopsis thaliana (thale cress) | PSII reaction center subunit VI |
| 8 | AA, BB, FC, GA, HB... (G, N, Y, g, n...) | Chlorophyll a-b binding protein 1, chloroplastic | polymer | 232 | 24885.1 | 12 | UniProt (P04778) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | Chlorophyll a-b protein 140,CAB-140,LHCII type I CAB-1 |
| 9 | BA, CB, J, UB (H, h, Av, BK) | Photosystem II reaction center protein H | polymer | 72 | 7575.7 | 4 | UniProt (P56780) Pfam (PF00737) | Arabidopsis thaliana (thale cress) | PSII-H,Photosystem II 10 kDa phosphoprotein |
| 10 | CA, DB, K, VB (I, i, Aw, BL) | Photosystem II reaction center protein I | polymer | 36 | 4170.9 | 4 | UniProt (P62100) Pfam (PF02532) | Arabidopsis thaliana (thale cress) | PSII-I,PSII 4.8 kDa protein |
| 11 | DA, EB, L, WB (K, k, Ay, BN) | Photosystem II reaction center protein K | polymer | 37 | 4239.1 | 4 | UniProt (P56782) Pfam (PF02533) | Arabidopsis thaliana (thale cress) | PSII-K |
| 12 | EA, FB, M, XB (L, l, Az, BO) | Photosystem II reaction center protein L | polymer | 38 | 4471.1 | 4 | UniProt (P60129) Pfam (PF02419) | Arabidopsis thaliana (thale cress) | PSII-L |
| 13 | FA, GB, N, YB (M, m, A1, BP) | Photosystem II reaction center protein M | polymer | 34 | 3783.5 | 4 | UniProt (P62109) Pfam (PF05151) | Arabidopsis thaliana (thale cress) | PSII-M |
| 14 | AC, HA, IB, P (S, s, A6, BV) | Chlorophyll a-b binding protein CP26, chloroplastic | polymer | 232 | 25232.8 | 4 | UniProt (Q9XF89) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | LHCB5,LHCIIc,Light-harvesting complex II protein 5 |
| 15 | BC, IA, JB, Q (T, t, A7, BW) | Photosystem II reaction center protein T | polymer | 33 | 3825.6 | 4 | UniProt (P61839) Pfam (PF01405) | Arabidopsis thaliana (thale cress) | PSII-T |
| 16 | CC, JA, KB, R (U, u, A8, BX) | Photosystem II 5 kDa protein, chloroplastic | polymer | 28 | 3178.8 | 4 | UniProt (Q39195) | Arabidopsis thaliana (thale cress) | PSII-T,Nuclear encoded psbT,PsbTn |
| 17 | DC, KA, LB, S (W, w, A0, BY) | Photosystem II reaction center W protein, chloroplastic | polymer | 54 | 6036.7 | 4 | UniProt (Q39194) Pfam (PF07123) | Arabidopsis thaliana (thale cress) | PSII 6.1 kDa protein |
| 18 | EC, LA, MB, T (X, x, BA, BZ) | (thale cress) hypothetical protein | polymer | 42 | 4186.9 | 4 | UniProt (A0A7G2E9B1) | Arabidopsis thaliana (thale cress) | |
| 19 | GC, NA, OB, V (Z, z, BC, Bb) | Photosystem II reaction center protein Z | polymer | 62 | 6569.8 | 4 | UniProt (P56790) Pfam (PF01737) | Arabidopsis thaliana (thale cress) | PSII-Z |
| 20 | HC, JC, OA, QA (A, a, R, BD) | Photosystem II protein D1 | polymer | 352 | 38830.1 | 4 | UniProt (P83755) Pfam (PF00124) | Arabidopsis thaliana (thale cress) | PSII D1 protein,Photosystem II Q(B) protein |
| 21 | IC, KC, PA, RA (C, c, 1, BF) | Photosystem II CP43 reaction center protein | polymer | 459 | 50086.3 | 4 | UniProt (P56778) Pfam (PF00421) | Arabidopsis thaliana (thale cress) | PSII 43 kDa protein,Protein CP-43 |
| 22 | LC, SA (r, BU) | Chlorophyll a-b binding protein CP29.1, chloroplastic | polymer | 250 | 27302.9 | 2 | UniProt (Q07473) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | LHCB4.1,LHCII protein 4.1 |
| 23 | ACA, AJ, AL, AM, BE... (Ba, Y, g, n, 7...) | CHLOROPHYLL B | non-polymer | 907.5 | 142 | Chemie (CHL) | |||
| 24 | AAA, ABA, AE, AG, AK... (BJ, BQ, 7, D, b...) | CHLOROPHYLL A | non-polymer | 893.5 | 352 | Chemie (CLA) | |||
| 25 | AD, AN, BD, BR, DBA... (5, s, r, BQ, BJ...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 48 | Chemie (LUT) PubChem (24728610) PubChem (177565809) PubChem (25202165) PubChem (177696530) PubChem (44481270) PubChem (46835684) PubChem (25245095) PubChem (53477744) PubChem (53477774) PubChem (181579) PubChem (441664) PubChem (53477760) PubChem (57922343) PubChem (31380) PubChem (90820720) PubChem (448437) PubChem (89305995) PubChem (91240120) PubChem (91519940) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (5368396) PubChem (6325550) PubChem (6433159) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (131801656) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (12085680) PubChem (10210008) PubChem (10257404) PubChem (139335388) PubChem (12359017) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (126970006) PubChem (175679236) PubChem (175679086) PubChem (131801655) PubChem (139595700) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (169423521) PubChem (169954357) PubChem (172748694) | |||
| 26 | AI, BN, CD, DR, FBA... (N, s, 5, r, BQ...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 22 | Chemie (NEX) PubChem (177697037) PubChem (21158515) PubChem (52948899) PubChem (4481261) PubChem (5282217) PubChem (159749) PubChem (5320120) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (10908146) PubChem (12358959) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (139033583) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198) | |||
| 27 | BI, CN, CW, DD, DG... (N, w, Az, 5, D...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 46 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 28 | AF, AH, CI, CR, DN... (8, G, N, r, y...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 22 | Chemie (XAT) PubChem (24970201) PubChem (46936684) PubChem (53477762) PubChem (179930) PubChem (51346155) PubChem (448438) PubChem (92096) PubChem (5282218) PubChem (5315242) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (126456015) PubChem (6384269) PubChem (6442428) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (9851662) PubChem (12358664) PubChem (12358665) PubChem (12358669) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (177696491) PubChem (129888894) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291) | |||
| 29 | AFA, AV, AW, AZ, BF... (BF, 4, Ay, BE, 8...) | BETA-CAROTENE | non-polymer | 536.9 | 46 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 30 | DH, DP, DZ, EDA, EFA... (I, C, BE, 1, BF...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 24 | Chemie (LMG) | |||
| 31 | CG, JZ, NK, VU (D, BG, d, 2) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) PubChem (23304240) PubChem (20286) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 32 | BW, DDA, DW, FG, HH... (Az, R, A1, D, L...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 16 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 33 | BV, HG, PZ, TK (4, F, BI, f) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
| 34 | AP, BP, CFA, CH, CP... (C, BF, H, a, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 20 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 35 | AEA, HP, SU, YN (BD, a, 2, A) | BICARBONATE ION | non-polymer | 61.0 | 4 | Chemie (BCT) PubChem (769) | |||
| 36 | AO, BEA, IP, UCA (A, BD, a, R) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 4 | Chemie (OEX) | |||
| 37 | BO, CEA, JP, VCA (A, BD, a, R) | FE (II) ION | non-polymer | 55.8 | 4 | Chemie (FE2) PubChem (27284) | |||
| 38 | ADA, FO, GEA, GO, HEA... (R, A, BD, a) | PHEOPHYTIN A | non-polymer | 871.2 | 8 | Chemie (PHO) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 90 |
| Total formula weight | 1651484.8 | |
| Non-Polymers* | Number of molecules | 766 |
| Total formula weight | 619924.8 | |
| All* | Total formula weight | 2271409.6 |
