9LE7
Coordinates of Cryo-EM structure of the Arabidopsis thaliana C4S4M4-type PSII supercomplex
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, TA, VA (5, 7, 9, AA) | Chlorophyll a-b binding protein, chloroplastic | polymer | 266 | 28193.9 | 4 | UniProt (A0A654EYS2) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | |
| 2 | B, UA (6, 0) | Chlorophyll a-b binding protein 3, chloroplastic | polymer | 243 | 26453.0 | 2 | UniProt (Q9S7M0) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | Light-harvesting chlorophyll B-binding protein 3,LHCB3*1,Lhcb3 |
| 3 | D, WA (8, AB) | Chlorophyll a-b binding protein, chloroplastic | polymer | 212 | 23198.3 | 2 | UniProt (A0A178WK60) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | |
| 4 | E, PB, W, XA (B, b, v, BE) | Photosystem II CP47 reaction center protein | polymer | 508 | 56091.8 | 4 | UniProt (P56777) Pfam (PF00421) | Arabidopsis thaliana (thale cress) | PSII 47 kDa protein,Protein CP-47 |
| 5 | F, QB, X, YA (D, d, 2, BG) | Photosystem II D2 protein | polymer | 352 | 39444.1 | 4 | UniProt (P56761) Pfam (PF00124) | Arabidopsis thaliana (thale cress) | PSII D2 protein,Photosystem Q(A) protein |
| 6 | G, RB, Y, ZA (E, e, 3, BH) | Cytochrome b559 subunit alpha | polymer | 83 | 9393.5 | 4 | UniProt (P56779) Pfam (PF00283) Pfam (PF00284) | Arabidopsis thaliana (thale cress) | PSII reaction center subunit V |
| 7 | AB, H, SB, Z (F, f, 4, BI) | Cytochrome b559 subunit beta | polymer | 39 | 4428.2 | 4 | UniProt (P62095) Pfam (PF00283) | Arabidopsis thaliana (thale cress) | PSII reaction center subunit VI |
| 8 | AA, BB, FC, GA, HB... (G, N, Y, g, n...) | Chlorophyll a-b binding protein 1, chloroplastic | polymer | 232 | 24885.1 | 12 | UniProt (P04778) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | Chlorophyll a-b protein 140,CAB-140,LHCII type I CAB-1 |
| 9 | BA, CB, J, UB (H, h, Av, BK) | Photosystem II reaction center protein H | polymer | 72 | 7575.7 | 4 | UniProt (P56780) Pfam (PF00737) | Arabidopsis thaliana (thale cress) | PSII-H,Photosystem II 10 kDa phosphoprotein |
| 10 | CA, DB, K, VB (I, i, Aw, BL) | Photosystem II reaction center protein I | polymer | 36 | 4170.9 | 4 | UniProt (P62100) Pfam (PF02532) | Arabidopsis thaliana (thale cress) | PSII-I,PSII 4.8 kDa protein |
| 11 | DA, EB, L, WB (K, k, Ay, BN) | Photosystem II reaction center protein K | polymer | 37 | 4239.1 | 4 | UniProt (P56782) Pfam (PF02533) | Arabidopsis thaliana (thale cress) | PSII-K |
| 12 | EA, FB, M, XB (L, l, Az, BO) | Photosystem II reaction center protein L | polymer | 38 | 4471.1 | 4 | UniProt (P60129) Pfam (PF02419) | Arabidopsis thaliana (thale cress) | PSII-L |
| 13 | FA, GB, N, YB (M, m, A1, BP) | Photosystem II reaction center protein M | polymer | 34 | 3783.5 | 4 | UniProt (P62109) Pfam (PF05151) | Arabidopsis thaliana (thale cress) | PSII-M |
| 14 | AC, HA, IB, P (S, s, A6, BV) | Chlorophyll a-b binding protein CP26, chloroplastic | polymer | 232 | 25232.8 | 4 | UniProt (Q9XF89) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | LHCB5,LHCIIc,Light-harvesting complex II protein 5 |
| 15 | BC, IA, JB, Q (T, t, A7, BW) | Photosystem II reaction center protein T | polymer | 33 | 3825.6 | 4 | UniProt (P61839) Pfam (PF01405) | Arabidopsis thaliana (thale cress) | PSII-T |
| 16 | CC, JA, KB, R (U, u, A8, BX) | Photosystem II 5 kDa protein, chloroplastic | polymer | 28 | 3178.8 | 4 | UniProt (Q39195) | Arabidopsis thaliana (thale cress) | PSII-T,Nuclear encoded psbT,PsbTn |
| 17 | DC, KA, LB, S (W, w, A0, BY) | Photosystem II reaction center W protein, chloroplastic | polymer | 54 | 6036.7 | 4 | UniProt (Q39194) Pfam (PF07123) | Arabidopsis thaliana (thale cress) | PSII 6.1 kDa protein |
| 18 | EC, LA, MB, T (X, x, BA, BZ) | (thale cress) hypothetical protein | polymer | 42 | 4186.9 | 4 | UniProt (A0A7G2E9B1) Pfam (PF06596) | Arabidopsis thaliana (thale cress) | |
| 19 | GC, NA, OB, V (Z, z, BC, Bb) | Photosystem II reaction center protein Z | polymer | 62 | 6569.8 | 4 | UniProt (P56790) Pfam (PF01737) | Arabidopsis thaliana (thale cress) | PSII-Z |
| 20 | HC, JC, OA, QA (A, a, R, BD) | Photosystem II protein D1 | polymer | 352 | 38830.1 | 4 | UniProt (P83755) Pfam (PF00124) | Arabidopsis thaliana (thale cress) | PSII D1 protein,Photosystem II Q(B) protein |
| 21 | IC, KC, PA, RA (C, c, 1, BF) | Photosystem II CP43 reaction center protein | polymer | 459 | 50086.3 | 4 | UniProt (P56778) Pfam (PF00421) | Arabidopsis thaliana (thale cress) | PSII 43 kDa protein,Protein CP-43 |
| 22 | LC, SA (r, BU) | Chlorophyll a-b binding protein CP29.1, chloroplastic | polymer | 250 | 27302.9 | 2 | UniProt (Q07473) Pfam (PF00504) | Arabidopsis thaliana (thale cress) | LHCB4.1,LHCII protein 4.1 |
| 23 | ACA, AJ, AL, AM, BE... (Ba, Y, g, n, 7...) | CHLOROPHYLL B | non-polymer | 907.5 | 142 | Chemie (CHL) | |||
| 24 | AAA, ABA, AE, AG, AK... (BJ, BQ, 7, D, b...) | CHLOROPHYLL A | non-polymer | 893.5 | 352 | Chemie (CLA) | |||
| 25 | AD, AN, BD, BR, DBA... (5, s, r, BQ, BJ...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 48 | Chemie (LUT) | |||
| 26 | AI, BN, CD, DR, FBA... (N, s, 5, r, BQ...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 22 | Chemie (NEX) | |||
| 27 | BI, CN, CW, DD, DG... (N, w, Az, 5, D...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 46 | Chemie (LHG) | |||
| 28 | AF, AH, CI, CR, DN... (8, G, N, r, y...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 22 | Chemie (XAT) | |||
| 29 | AFA, AV, AW, AZ, BF... (BF, 4, Ay, BE, 8...) | BETA-CAROTENE | non-polymer | 536.9 | 46 | Chemie (BCR) | |||
| 30 | DH, DP, DZ, EDA, EFA... (I, C, BE, 1, BF...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 24 | Chemie (LMG) | |||
| 31 | CG, JZ, NK, VU (D, BG, d, 2) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 32 | BW, DDA, DW, FG, HH... (Az, R, A1, D, L...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 16 | Chemie (SQD) | |||
| 33 | BV, HG, PZ, TK (4, F, BI, f) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
| 34 | AP, BP, CFA, CH, CP... (C, BF, H, a, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 20 | Chemie (DGD) | |||
| 35 | AEA, HP, SU, YN (BD, a, 2, A) | BICARBONATE ION | non-polymer | 61.0 | 4 | Chemie (BCT) | |||
| 36 | AO, BEA, IP, UCA (A, BD, a, R) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 4 | Chemie (OEX) | |||
| 37 | BO, CEA, JP, VCA (A, BD, a, R) | FE (II) ION | non-polymer | 55.8 | 4 | Chemie (FE2) | |||
| 38 | ADA, FO, GEA, GO, HEA... (R, A, BD, a) | PHEOPHYTIN A | non-polymer | 871.2 | 8 | Chemie (PHO) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 90 |
| Total formula weight | 1651484.8 | |
| Non-Polymers* | Number of molecules | 766 |
| Total formula weight | 619924.8 | |
| All* | Total formula weight | 2271409.6 |
