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9LDF

The structure of TkoKptA/DNA/Appr>P complex-A

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Probable RNA 2'-phosphotransferasepolymer18020978.31UniProt (Q5JFX3)
Pfam (PF01885)
Thermococcus kodakarensis (Pyrococcus kodakaraensis (strain KOD1))
2B
(C)
DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')polymer103087.11synthetic construct
3C
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
4D
(A)
[[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphatenon-polymer621.31Chemie (A1EJE)
5E
(A)
IMIDAZOLEnon-polymer69.11Chemie (IMD)
6F, G
(A, C)
waterwater18.046Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight24065.4
Non-Polymers*Number of molecules3
Total formula weight782.5
All*Total formula weight24847.8
*Water molecules are not included.

245663

PDB entries from 2025-12-03

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