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9LD3

The complex structure of K63A/2',3',5'-P-A/ADPR

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Probable RNA 2'-phosphotransferasepolymer18020920.22UniProt (Q5JFX3)
Pfam (PF01885)
Thermococcus kodakarensis (Pyrococcus kodakaraensis (strain KOD1))
2C, F
(A, B)
GLYCEROLnon-polymer92.12Chemie (GOL)
3D, H
(A, B)
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATEnon-polymer559.32Chemie (AR6)
4E, G
(A, B)
[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-diphosphonooxy-oxolan-2-yl]methyl dihydrogen phosphatenon-polymer507.22Chemie (A1EJC)
5I, J
(A, B)
waterwater18.0244Chemie (HOH)
Sequence modifications
A, B: 1 - 180 (UniProt: Q5JFX3)
PDBExternal DatabaseDetails
Ala 63Lys 63engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight41840.3
Non-Polymers*Number of molecules6
Total formula weight2317.2
All*Total formula weight44157.5
*Water molecules are not included.

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PDB entries from 2026-03-11

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