9L5V

cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, Q (A, a)	Photosystem II protein D1	polymer	374	41541.2	2	UniProt (by SIFTS) (A6MVT2)	Rhodomonas sp. NIES-2332
2	B, R (B, b)	Photosystem II CP47 reaction center protein	polymer	508	56199.9	2	UniProt (by SIFTS) (A6MW31)	Rhodomonas sp. NIES-2332
3	C, S (C, c)	Photosystem II CP43 reaction center protein	polymer	486	53468.3	2	UniProt (by SIFTS) (A6MVR2)	Rhodomonas sp. NIES-2332
4	D, T (D, d)	Photosystem II D2 protein	polymer	351	39160.7	2	UniProt (by SIFTS) (A6MVR3)	Rhodomonas sp. NIES-2332
5	E, U (E, e)	Cytochrome b559 subunit alpha	polymer	84	9503.7	2	UniProt (by SIFTS) (A6MVV5)	Rhodomonas sp. NIES-2332
6	F, V (F, f)	Cytochrome b559 subunit beta	polymer	42	4860.8	2	UniProt (by SIFTS) (A6MVV4)	Rhodomonas sp. NIES-2332
7	G, W (H, h)	Photosystem II reaction center protein H	polymer	67	7429.8	2	UniProt (A6MW35)	Rhodomonas sp. NIES-2332	PSII-H
8	H, X (I, i)	Photosystem II reaction center protein I	polymer	38	4390.1	2	UniProt (by SIFTS) (A6MVW0)	Rhodomonas sp. NIES-2332
9	I, Y (K, k)	Photosystem II reaction center protein K	polymer	45	5025.1	2	UniProt (by SIFTS) (A6MVZ3)	Rhodomonas sp. NIES-2332
10	J, Z (L, l)	Photosystem II reaction center protein L	polymer	38	4363.1	2	UniProt (by SIFTS) (A6MVV3)	Rhodomonas sp. NIES-2332
11	AA, K (M, m)	Photosystem II protein M	polymer	118	11851.8	2		Rhodomonas sp. NIES-2332
12	BA, L (T, t)	Photosystem II reaction center protein T	polymer	32	3708.5	2	UniProt (by SIFTS) (A6MW32)	Rhodomonas sp. NIES-2332
13	CA, M (W, w)	Photosystem II protein W	polymer	121	12592.6	2		Rhodomonas sp. NIES-2332
14	DA, N (X, x)	Photosystem II reaction center X protein	polymer	39	4193.0	2	UniProt (by SIFTS) (A6MVU5)	Rhodomonas sp. NIES-2332
15	EA, O (Y, y)	Photosystem II reaction center protein Psb30	polymer	34	3662.5	2	UniProt (by SIFTS) (A6MVU9)	Rhodomonas sp. NIES-2332
16	FA, P (Z, z)	Photosystem II reaction center protein Z	polymer	62	6656.1	2	UniProt (by SIFTS) (A6MVZ2)	Rhodomonas sp. NIES-2332
17	GA, HA (1, N)	ACPII-1	polymer	234	25355.3	2		Rhodomonas sp. NIES-2332
18	IA, OA (2, O)	ACPII-2	polymer	215	23785.5	2		Rhodomonas sp. NIES-2332
19	JA, PA (3, P)	ACPII-3	polymer	182	19900.9	2		Rhodomonas sp. NIES-2332
20	KA, QA (4, Q)	ACPII-4	polymer	200	21802.3	2		Rhodomonas sp. NIES-2332
21	LA, RA (5, R)	ACPII-5	polymer	228	24844.6	2		Rhodomonas sp. NIES-2332
22	MA, SA (6, S)	ACPII-6	polymer	174	18970.8	2		Rhodomonas sp. NIES-2332
23	NA (G)	Psb-gama_linker	polymer	292	31784.1	1		Rhodomonas sp. NIES-2332
24	TA (g)	Psb-gama_linker	polymer	292	31815.2	1		Rhodomonas sp. NIES-2332
25	PD, UA (a, A)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2) PubChem (27284)
26	AD, AF, AI, AJ, AL... (D, c, 2, 3, 6...)	CHLOROPHYLL A	non-polymer		893.5	194	Chemie (CLA)
27	SD, VF, XA, YC (a, d, A, D)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
28	CG, FD, GG, HJ, ID... (d, D, k, 3, H...)	1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene	non-polymer		536.9	24	Chemie (WVN) PubChem (21157544) PubChem (42626712) PubChem (177436564) PubChem (177470647) PubChem (177542722) PubChem (91336200) PubChem (4369188) PubChem (124928596) PubChem (24090) PubChem (152743367) PubChem (152743524) PubChem (155920498) PubChem (124928597) PubChem (124928598) PubChem (124928599) PubChem (6324891) PubChem (6419724) PubChem (6419725) PubChem (12305654) PubChem (145945968) PubChem (152743362) PubChem (152743363) PubChem (154497727) PubChem (155817591) PubChem (162950107) PubChem (162950108) PubChem (168313287) PubChem (172682109) PubChem (175679210)
29	AB, CD, VD, ZF (A, D, a, d)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9) PubChem (23304240) PubChem (21881166) PubChem (20286) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402)
30	BB, UC, WD, XE (A, D, a, c)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	4	Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (134765349) PubChem (102201395) PubChem (5459390) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145)
31	CB, YD, YE (A, a, c)	CHLORIDE ION	non-polymer		35.5	3	Chemie (CL) PubChem (312)
32	AE, DB, EB, ZD (a, A)	MANGANESE (II) ION	non-polymer		54.9	4	Chemie (MN) PubChem (27854)
33	AK, BE, BG, BM, DG... (4, a, d, O, D...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	22	Chemie (LMG)
34	AC, AG, DD, DO, EH... (C, d, D, R, 1...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	18	Chemie (LHG) PubChem (46936292) PubChem (65144) PubChem (73416066) PubChem (13305396) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (138986743)
35	FG, JD, PF, QC (h, H, c, C)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	4	Chemie (DGD) PubChem (24865462) PubChem (50904896) PubChem (24865463) PubChem (46936671) PubChem (53480668) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (448441) PubChem (171123158) PubChem (134746152) PubChem (140529801)
36	TF, VC (d, D)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT) PubChem (769)
37	EG, HD (f, F)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	2	Chemie (HEM)
38	AN, BN, CL, HM, JH... (Q, 6, P, N, 2...)	Chlorophyll c2	non-polymer		608.9	22	Chemie (KC2)
39	AH, AO, BH, BK, CH... (1, R, 4, O, 3...)	(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol	non-polymer		564.8	46	Chemie (II0) PubChem (177692900) PubChem (6443740) PubChem (78384730) PubChem (101415957) PubChem (5316280) PubChem (12305997) PubChem (162955782) PubChem (172707811)
40	AM, BO, DH, IN, QI... (O, R, 1, Q, 2...)	(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol	non-polymer		550.9	8	Chemie (IHT) PubChem (21778309) PubChem (23424958) PubChem (73838001)
41	AP, BP, CP, DP, EP... (I, K, L, M, T...)	water	water		18.0	676	Chemie (HOH)

Contents of the asymmetric unit

Polymers	Number of chains	46
	Total formula weight	870132.6
Non-Polymers*	Number of molecules	363
	Total formula weight	275590.7
All*	Total formula weight	1145723.2

*Water molecules are not included.