9KQB
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, NA, OA (1, 7, 5, g) | Fucoxanthin chlorophyll a/c binding protein II (FCPII-1) | polymer | 166 | 18307.8 | 4 | Chrysotila roscoffensis | ||
| 2 | B, J (6, J) | Fucoxanthin chlorophyll a/c binding protein II (FCPII-5) | polymer | 167 | 18451.2 | 2 | Chrysotila roscoffensis | ||
| 3 | D, R (A, a) | Photosystem II protein D1 | polymer | 360 | 39588.0 | 2 | UniProt (A0A7S4BZA9) | Chrysotila roscoffensis | |
| 4 | E, S (B, b) | Photosystem II CP47 reaction center protein | polymer | 509 | 56324.3 | 2 | UniProt (Q4G3C5) | Chrysotila roscoffensis | PSII 47 kDa protein,Protein CP-47 |
| 5 | F, T (E, e) | Cytochrome b559 subunit alpha | polymer | 82 | 9220.3 | 2 | UniProt (Q4G380) | Chrysotila roscoffensis | PSII reaction center subunit V |
| 6 | G, U (F, f) | Cytochrome b559 subunit beta | polymer | 42 | 4858.7 | 2 | UniProt (Q4G381) | Chrysotila roscoffensis | PSII reaction center subunit VI |
| 7 | H, V (H, h) | Photosystem II reaction center protein H (psbH) | polymer | 65 | 7259.6 | 2 | Chrysotila roscoffensis | ||
| 8 | I, W (I, i) | Photosystem II reaction center protein I (psbI) | polymer | 38 | 4461.2 | 2 | Chrysotila roscoffensis | ||
| 9 | K, X (K, k) | Photosystem II reaction center protein K (psbK) | polymer | 40 | 4461.4 | 2 | Chrysotila roscoffensis | ||
| 10 | L, Y (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4393.1 | 2 | UniProt (D9MYJ9) | Chrysotila roscoffensis | PSII-L |
| 11 | M, Z (M, m) | Photosystem II reaction center protein M (psbM) | polymer | 130 | 13414.6 | 2 | Chrysotila roscoffensis | ||
| 12 | AA, N (N, n) | Photosystem II reaction center protein Psb36 | polymer | 36 | 3459.0 | 2 | UniProt (A0A7S4C3N2) | Chrysotila roscoffensis | |
| 13 | BA, O (T, t) | Photosystem II reaction center protein T | polymer | 32 | 3776.7 | 2 | UniProt (A0A3S6R2W1) | Chrysotila roscoffensis | PSII-T |
| 14 | CA, P (W, w) | Photosystem II reaction center protein W (psbW) | polymer | 53 | 5643.1 | 2 | Chrysotila roscoffensis | ||
| 15 | DA, Q (X, x) | Photosystem II reaction center protein X (psbX) | polymer | 36 | 3674.5 | 2 | Chrysotila roscoffensis | ||
| 16 | EA, FA (2, 8) | Fucoxanthin chlorophyll a/c binding protein II (FCPII-2) | polymer | 225 | 24920.7 | 2 | Chrysotila roscoffensis | ||
| 17 | GA, HA (D, d) | Photosystem II D2 protein | polymer | 351 | 39143.8 | 2 | UniProt (Q4G395) | Chrysotila roscoffensis | PSII D2 protein,Photosystem Q(A) protein |
| 18 | IA, JA (C, c) | Photosystem II CP43 reaction center protein | polymer | 445 | 48733.7 | 2 | UniProt (A0A075DWU3) | Chrysotila roscoffensis | PSII 43 kDa protein,Protein CP-43 |
| 19 | KA, LA (9, 3) | Light harvesting protein | polymer | 216 | 23662.5 | 2 | UniProt (A0A7S4BJL5) | Chrysotila roscoffensis | |
| 20 | MA, PA (4, G) | Fucoxanthin chlorophyll a/c binding protein II (FCPII-4) | polymer | 167 | 18438.1 | 2 | Chrysotila roscoffensis | ||
| 21 | AC, AD, AE, AH, AJ... (7, B, J, 8, C...) | CHLOROPHYLL A | non-polymer | 893.5 | 156 | Chemie (CLA) | |||
| 22 | AB, CL, FC, SL (1, 5, 7, g) | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol | non-polymer | 582.9 | 4 | Chemie (DD6) PubChem (14160123) PubChem (72964028) PubChem (6449888) PubChem (10579169) PubChem (11621213) PubChem (102007228) PubChem (10817096) PubChem (137349167) PubChem (172636470) PubChem (162909187) PubChem (172781022) | |||
| 23 | BB, CB, DB, DL, EL... (1, 5, G, 8, 7...) | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate | non-polymer | 658.9 | 28 | Chemie (A86) PubChem (21776532) PubChem (91530) PubChem (46781664) PubChem (541529) PubChem (59370904) PubChem (59438846) PubChem (177442568) PubChem (89808300) PubChem (90784335) PubChem (10009558) PubChem (88873479) PubChem (91266697) PubChem (15559433) PubChem (15559434) PubChem (15559435) PubChem (5281239) PubChem (101608998) PubChem (102200897) PubChem (5364094) PubChem (124298579) PubChem (124298578) PubChem (124298576) PubChem (102200898) PubChem (102232483) PubChem (125183403) PubChem (9961263) PubChem (123264561) PubChem (124298577) PubChem (140222158) PubChem (15559432) PubChem (162962337) PubChem (163285374) PubChem (138115313) PubChem (140222160) PubChem (154828419) PubChem (162962338) PubChem (162962339) PubChem (162962340) PubChem (162962341) PubChem (172812670) | |||
| 24 | AK, BK, EB, FB, FL... (9, 1, 5, G, 3...) | Chlorophyll c1 | non-polymer | 610.9 | 36 | Chemie (KC1) | |||
| 25 | BG, BJ, CG, EJ, FG... (h, C, c, m, 1...) | BETA-CAROTENE | non-polymer | 536.9 | 18 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (86765360) PubChem (6477957) PubChem (9828626) PubChem (91827292) PubChem (10256668) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (5280489) PubChem (92863345) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (124919640) PubChem (124919639) PubChem (129651951) PubChem (132274419) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 26 | EI, NC, QH, UE (d, A, D, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 27 | DI, EG, KI, QC, RE... (d, l, A, a, D...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 8 | Chemie (LHG) PubChem (446440) PubChem (46936292) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (11846227) PubChem (13305396) PubChem (138986743) | |||
| 28 | AG, AI, LD, LE, MD... (f, D, B, L, M...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 21 | Chemie (LMG) | |||
| 29 | BI, IL, JL, PH, SC... (D, 5, g, 8, A...) | DODECYL-ALPHA-D-MALTOSIDE | non-polymer | 510.6 | 9 | Chemie (LMU) PubChem (16220143) PubChem (114880) PubChem (24802120) PubChem (25021193) PubChem (44119948) PubChem (445456) PubChem (46936627) PubChem (53393702) PubChem (56845466) PubChem (3481630) PubChem (58112562) PubChem (58253045) PubChem (60087035) PubChem (59615220) PubChem (68322761) PubChem (68338004) PubChem (68441652) PubChem (70796428) PubChem (70813879) PubChem (70839937) PubChem (2802066) PubChem (75487624) PubChem (89796216) PubChem (9849225) PubChem (91094859) PubChem (91608950) PubChem (10413991) PubChem (90817611) PubChem (95566088) PubChem (95566089) PubChem (95566090) PubChem (96327540) PubChem (97038234) PubChem (97038235) PubChem (97294875) PubChem (98046621) PubChem (98046622) PubChem (98046623) PubChem (100976848) PubChem (101111379) PubChem (101111381) PubChem (95566087) PubChem (102565427) PubChem (102219025) PubChem (117716045) PubChem (117753833) PubChem (118443377) PubChem (123281924) PubChem (124184997) PubChem (124196217) PubChem (124196220) PubChem (126735853) PubChem (126735860) PubChem (129720403) PubChem (140505128) PubChem (153835411) PubChem (134694723) PubChem (155885597) PubChem (140479759) PubChem (140841257) PubChem (169619620) PubChem (154810097) PubChem (159812235) PubChem (173767704) PubChem (173885518) PubChem (163184859) | |||
| 30 | CJ, DG, DJ, QD, TJ... (C, h, B, c, H...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (448441) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (134746152) PubChem (154573294) PubChem (140529801) PubChem (171123158) | |||
| 31 | AF, NI, QE, RD, SD (b, C, X, B) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 5 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (5459390) PubChem (159321) PubChem (9810997) PubChem (9918745) PubChem (481096) PubChem (10219110) PubChem (10373133) PubChem (14463145) PubChem (102201395) PubChem (134765349) | |||
| 32 | UD, ZF (E, f) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 33 | CI, RH (d, D) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 34 | LI, UH (d, D) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 35 | JI, YH (d, D) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 2 | Chemie (PL9) PubChem (20286) PubChem (23304240) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 36 | AN, BN, CN, DN, EN... (x, 2, D, d, C...) | water | water | 18.0 | 181 | Chemie (HOH) |
Sequence modifications
B, b: 1 - 509 (UniProt: Q4G3C5)
D, d: 1 - 351 (UniProt: Q4G395)
C, c: 1 - 445 (UniProt: A0A075DWU3)
9, 3: 1 - 206 (UniProt: A0A7S4BJL5)
| PDB | External Database | Details |
|---|---|---|
| Leu 106 | Met 106 | conflict |
| Ala 146 | Ser 146 | conflict |
| Ala 161 | Thr 161 | conflict |
| Val 174 | Ile 174 | conflict |
| Pro 187 | Ala 187 | conflict |
| Ile 210 | Leu 210 | conflict |
| Ala 290 | Ser 290 | conflict |
| Ile 292 | Leu 292 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 282 | Ala 282 | conflict |
| Leu 283 | Ile 283 | conflict |
| Ser 294 | Ala 294 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asp 79 | Asn 105 | conflict |
| Ser 144 | Cys 170 | conflict |
| Ile 170 | Val 196 | conflict |
| Thr 172 | Ser 198 | conflict |
| Val 253 | Gly 279 | conflict |
| Ser 259 | Ala 285 | conflict |
| Thr 399 | Cys 425 | conflict |
| Thr 400 | Cys 426 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Leu 8 | Phe 8 | conflict |
| Met 77 | Ile 77 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 42 |
| Total formula weight | 741000.2 | |
| Non-Polymers* | Number of molecules | 305 |
| Total formula weight | 236752.1 | |
| All* | Total formula weight | 977752.4 |






