9KBN
Crystal structure of T2R-TTL-IKP104-Colchicine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | Detyrosinated tubulin alpha-1B chain | polymer | 450 | 50041.3 | 2 | UniProt (Q2XVP4) Pfam (PF00091) Pfam (PF03953) | Sus scrofa (pig) | |
| 2 | B, D (B, D) | Tubulin beta chain | polymer | 431 | 48391.4 | 2 | UniProt (A0A8D0VN39) Pfam (PF00091) Pfam (PF03953) | Sus scrofa (pig) | |
| 3 | E (E) | Stathmin-4 | polymer | 143 | 16844.2 | 1 | UniProt (P63043) Pfam (PF00836) | Rattus norvegicus (Norway rat) | Stathmin-like protein B3,RB3 |
| 4 | F (F) | Tubulin tyrosine ligase | polymer | 384 | 44378.5 | 1 | UniProt (A0A8V0Z8P0) Pfam (PF03133) | Gallus gallus (chicken) | |
| 5 | G, R, X (A, C, D) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 3 | Chemie (GTP) | |||
| 6 | H, Q, S, V, Z (A, C, D, F) | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
| 7 | I, J, L, M, T... (A, B, C, D) | CALCIUM ION | non-polymer | 40.1 | 7 | Chemie (CA) | |||
| 8 | K (B) | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 1 | Chemie (MES) | |||
| 9 | N (B) | 1-(2-chloranyl-3,5-dimethoxy-phenyl)-2-(4-fluorophenyl)-3-methyl-6-phenyl-pyridin-4-one | non-polymer | 449.9 | 1 | Chemie (W4Q) | |||
| 10 | O, Y (B, D) | N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide | non-polymer | 399.4 | 2 | Chemie (LOC) | |||
| 11 | P (B) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 12 | AA (F) | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | non-polymer | 505.2 | 1 | Chemie (ACP) | |||
| 13 | BA, CA, DA, EA, FA... (A, B, C, D, E...) | water | water | 18.0 | 108 | Chemie (HOH) |
Sequence modifications
E: 5 - 145 (UniProt: P63043)
F: 1 - 378 (UniProt: A0A8V0Z8P0)
| PDB | External Database | Details |
|---|---|---|
| Met 3 | - | initiating methionine |
| Ala 4 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| - | Ala 53 | deletion |
| - | Glu 54 | deletion |
| - | Met 55 | deletion |
| - | Gln 56 | deletion |
| - | Gln 57 | deletion |
| - | Gln 58 | deletion |
| - | Leu 59 | deletion |
| - | Leu 60 | deletion |
| - | Glu 61 | deletion |
| - | Gly 62 | deletion |
| - | Asp 63 | deletion |
| - | Gln 64 | deletion |
| - | Thr 65 | deletion |
| - | Leu 66 | deletion |
| - | Val 67 | deletion |
| - | Leu 68 | deletion |
| - | Ala 69 | deletion |
| - | Ser 70 | deletion |
| - | Ser 71 | deletion |
| - | Thr 72 | deletion |
| - | His 73 | deletion |
| - | Pro 74 | deletion |
| - | Glu 75 | deletion |
| - | Ser 76 | deletion |
| - | Val 77 | deletion |
| - | Asp 78 | deletion |
| - | Ser 79 | deletion |
| - | Asp 80 | deletion |
| - | Lys 81 | deletion |
| - | Asn 82 | deletion |
| - | His 83 | deletion |
| - | Gly 84 | deletion |
| - | Phe 85 | deletion |
| His 379 | - | expression tag |
| His 380 | - | expression tag |
| His 381 | - | expression tag |
| His 382 | - | expression tag |
| His 383 | - | expression tag |
| His 384 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 258088.0 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 4364.0 | |
| All* | Total formula weight | 262452.1 |
