9K07
Cryo-EM structure of the DSO-5a-bound human BRS3-Gq complex
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (R) | Bombesin receptor subtype-3,Oplophorus-luciferin 2-monooxygenase catalytic subunit | polymer | 612 | 67457.6 | 1 | UniProt (P32247) UniProt (Q9GV45) Pfam (PF00001) | Homo sapiens (human) | BRS-3,19kOLase |
| 2 | B (A) | Guanine nucleotide-binding protein G(i) subunit alpha-2,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | polymer | 246 | 28084.8 | 1 | UniProt (P04899) UniProt (P63092) Pfam (PF00503) | Homo sapiens (human) | Adenylate cyclase-inhibiting G alpha protein,Adenylate cyclase-stimulating G alpha protein |
| 3 | C (E) | scFv16 | polymer | 267 | 28668.9 | 1 | Mus musculus | ||
| 4 | D (B) | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | polymer | 345 | 37915.5 | 1 | UniProt (P54311) Pfam (PF25391) | Rattus norvegicus (Norway rat) | Transducin beta chain 1 |
| 5 | E (G) | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | polymer | 70 | 7729.9 | 1 | UniProt (P63212) Pfam (PF00631) | Bos taurus (domestic cattle) | G gamma-I |
| 6 | F (N) | Nanobody-35 | polymer | 140 | 15343.0 | 1 | Lama glama | ||
| 7 | G (R) | [(1~{S})-1-[1,4-dimethoxy-8-nitroso-5-(oxidanylamino)naphthalen-2-yl]-2,2-dimethyl-but-3-enyl] furan-2-carboxylate | non-polymer | 440.4 | 1 | Chemie (A1EL6) |
Sequence modifications
R: 1 - 399 (UniProt: P32247)
R: 416 - 571 (UniProt: Q9GV45)
A: 1 - 39 (UniProt: P04899)
A: 40 - 57 (UniProt: P63092)
A: 66 - 115 (UniProt: P63092)
A: 116 - 246 (UniProt: P63092)
B: 2 - 340 (UniProt: P54311)
| PDB | External Database | Details |
|---|---|---|
| Met -15 | - | initiating methionine |
| Lys -14 | - | expression tag |
| Thr -13 | - | expression tag |
| Ile -12 | - | expression tag |
| Ile -11 | - | expression tag |
| Ala -10 | - | expression tag |
| Leu -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Tyr -7 | - | expression tag |
| Ile -6 | - | expression tag |
| Phe -5 | - | expression tag |
| Cys -4 | - | expression tag |
| Leu -3 | - | expression tag |
| Val -2 | - | expression tag |
| Phe -1 | - | expression tag |
| Ala 0 | - | expression tag |
| Gly 400 | - | linker |
| Ser 401 | - | linker |
| Ser 402 | - | linker |
| Gly 403 | - | linker |
| Gly 404 | - | linker |
| Gly 405 | - | linker |
| Gly 406 | - | linker |
| Ser 407 | - | linker |
| Gly 408 | - | linker |
| Gly 409 | - | linker |
| Gly 410 | - | linker |
| Gly 411 | - | linker |
| Ser 412 | - | linker |
| Ser 413 | - | linker |
| Gly 414 | - | linker |
| Val 415 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Glu 419 | Ala 31 | conflict |
| Glu 426 | Gln 38 | conflict |
| Ala 430 | Gly 42 | conflict |
| Leu 433 | Gln 45 | conflict |
| Val 442 | Leu 54 | conflict |
| Leu 446 | Phe 58 | conflict |
| Asn 448 | Ala 60 | conflict |
| Ala 450 | Gly 62 | conflict |
| Arg 458 | Lys 70 | conflict |
| Ile 459 | Val 71 | conflict |
| Arg 461 | Leu 73 | conflict |
| Ala 466 | Gly 78 | conflict |
| Ile 469 | Ala 81 | conflict |
| Ala 482 | Gly 94 | conflict |
| Asp 483 | Phe 95 | conflict |
| Ala 486 | Gly 98 | conflict |
| Gln 487 | Leu 99 | conflict |
| Glu 490 | Met 102 | conflict |
| Val 491 | Ile 103 | conflict |
| Val 505 | Ile 117 | conflict |
| Pro 508 | His 120 | conflict |
| Leu 522 | Ile 134 | conflict |
| Asn 523 | Asp 135 | conflict |
| Glu 530 | Pro 142 | conflict |
| Lys 539 | Gln 151 | conflict |
| Ile 553 | Tyr 165 | conflict |
| Thr 559 | Asn 171 | conflict |
| Met 564 | Leu 176 | conflict |
| Ser 572 | - | expression tag |
| Gly 573 | - | expression tag |
| Gly 574 | - | expression tag |
| Ser 575 | - | expression tag |
| Glu 576 | - | expression tag |
| Asn 577 | - | expression tag |
| Leu 578 | - | expression tag |
| Tyr 579 | - | expression tag |
| Phe 580 | - | expression tag |
| Gln 581 | - | expression tag |
| Gly 582 | - | expression tag |
| Gly 583 | - | expression tag |
| Ser 584 | - | expression tag |
| Ala 585 | - | expression tag |
| Gly 586 | - | expression tag |
| Ser 587 | - | expression tag |
| Ala 588 | - | expression tag |
| His 589 | - | expression tag |
| His 590 | - | expression tag |
| His 591 | - | expression tag |
| His 592 | - | expression tag |
| His 593 | - | expression tag |
| His 594 | - | expression tag |
| His 595 | - | expression tag |
| His 596 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ser 3 | Cys 3 | conflict |
| Arg 31 | Ala 31 | conflict |
| Thr 33 | Glu 33 | conflict |
| Leu 34 | Val 34 | conflict |
| Arg 35 | Lys 35 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asp 42 | Gly 49 | conflict |
| Asn 43 | Glu 50 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gly 58 | - | linker |
| Gly 59 | - | linker |
| Ser 60 | - | linker |
| Gly 61 | - | linker |
| Gly 62 | - | linker |
| Ser 63 | - | linker |
| Gly 64 | - | linker |
| Gly 65 | - | linker |
| Asp 111 | Ala 249 | conflict |
| Asp 114 | Ser 252 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asp 124 | Leu 272 | conflict |
| Lys 195 | Asp 343 | conflict |
| Val 198 | Leu 346 | conflict |
| Asp 199 | Arg 347 | conflict |
| Ile 210 | Tyr 358 | conflict |
| Ala 224 | Ile 372 | conflict |
| Ile 227 | Val 375 | conflict |
| Lys 232 | Arg 380 | conflict |
| Leu 236 | Gln 384 | conflict |
| Gln 237 | Arg 385 | conflict |
| Asn 239 | His 387 | conflict |
| Glu 242 | Gln 390 | conflict |
| Asn 244 | Glu 392 | conflict |
| Val 246 | Leu 394 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -4 | - | initiating methionine |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Leu 0 | - | expression tag |
| Gln 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 185199.8 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 440.4 | |
| All* | Total formula weight | 185640.2 |






