9JOX
Cryo-EM structure of the light-driven chloride ion-pumping rhodopsin, NM-R3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Chloride pumping rhodopsin | polymer | 279 | 30710.9 | 5 | UniProt (W8VZW3) Pfam (PF01036) | Nonlabens marinus S1-08 | |
| 2 | CA, F, KA, O, V (D, A, E, B, C) | RETINAL | non-polymer | 284.4 | 5 | Chemie (RET) | |||
| 3 | DA, EA, G, H, LA... (D, A, E, B, C) | CHLORIDE ION | non-polymer | 35.5 | 10 | Chemie (CL) | |||
| 4 | FA, I, NA, R, Y (D, A, E, B, C) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 5 | Chemie (PC1) | |||
| 5 | GA, J, L, S, Z (D, A, B, C) | DIUNDECYL PHOSPHATIDYL CHOLINE | non-polymer | 622.8 | 5 | Chemie (PLC) | |||
| 6 | IA, K (D, A) | DODECANE | non-polymer | 170.3 | 2 | Chemie (D12) | |||
| 7 | BA, HA, JA, M, OA... (D, E, A, B) | HEXADECANE | non-polymer | 226.4 | 6 | Chemie (R16) | |||
| 8 | AA, N (C, B) | Octadecane | non-polymer | 254.5 | 2 | Chemie (8K6) | |||
| 9 | PA, U (E, B) | TETRADECANE | non-polymer | 198.4 | 2 | Chemie (C14) | |||
| 10 | QA, RA, SA, TA, UA (A, B, C, D, E) | water | water | 18.0 | 150 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 272 (UniProt: W8VZW3)
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 153554.7 | |
| Non-Polymers* | Number of molecules | 37 |
| Total formula weight | 11446.7 | |
| All* | Total formula weight | 165001.4 |
