9JOW
Cryo-EM structure of the myxol-bound light-driven chloride ion-pumping rhodopsin, NM-R3
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Chloride pumping rhodopsin | polymer | 279 | 30710.9 | 5 | UniProt (W8VZW3) | Nonlabens marinus S1-08 | |
| 2 | DA, F, OA, S, YA (C, A, D, B, E) | RETINAL | non-polymer | 284.4 | 5 | Chemie (RET) PubChem (1070) PubChem (23254473) PubChem (177675058) PubChem (638015) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (5280490) PubChem (5353924) PubChem (5381765) PubChem (6436079) PubChem (6436082) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 3 | EA, G, PA, T, ZA (C, A, D, B, E) | (3~{S},4~{Z},6~{E},8~{Z},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]pentacosa-4,6,8,10,12,14,16,18,20,22,24-undecaene-2,3-diol | non-polymer | 584.9 | 5 | Chemie (A1L4O) PubChem (44237363) PubChem (73229466) PubChem (91149282) PubChem (139291909) PubChem (16061290) PubChem (176468804) | |||
| 4 | AB, BB, FA, GA, H... (E, C, A, D, B) | CHLORIDE ION | non-polymer | 35.5 | 10 | Chemie (CL) PubChem (312) | |||
| 5 | CB, HA, J, SA, W (E, C, A, D, B) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 5 | Chemie (PC1) PubChem (65146) PubChem (94190) PubChem (10417837) | |||
| 6 | IA, K, P, TA, X (C, A, D, B) | DIUNDECYL PHOSPHATIDYL CHOLINE | non-polymer | 622.8 | 5 | Chemie (PLC) PubChem (65263) PubChem (87507) PubChem (445355) | |||
| 7 | AA, BA, FB, L, M... (B, E, A, D) | HEXADECANE | non-polymer | 226.4 | 11 | Chemie (R16) PubChem (11006) | |||
| 8 | MA, N, R (C, A, B) | Octadecane | non-polymer | 254.5 | 3 | Chemie (8K6) PubChem (11635) | |||
| 9 | DB, O, WA (E, A, D) | DODECANE | non-polymer | 170.3 | 3 | Chemie (D12) PubChem (8182) PubChem (5359624) | |||
| 10 | CA, EB, GB, JA, KA... (B, E, C) | TETRADECANE | non-polymer | 198.4 | 6 | Chemie (C14) PubChem (12389) | |||
| 11 | LA (C) | DECANE | non-polymer | 142.3 | 1 | Chemie (D10) PubChem (15600) | |||
| 12 | HB, IB, JB, KB, LB (A, B, C, D, E) | water | water | 18.0 | 187 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 272 (UniProt: W8VZW3)
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 153554.7 | |
| Non-Polymers* | Number of molecules | 54 |
| Total formula weight | 16863.9 | |
| All* | Total formula weight | 170418.6 |
