9JOW
Cryo-EM structure of the myxol-bound light-driven chloride ion-pumping rhodopsin, NM-R3
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Chloride pumping rhodopsin | polymer | 279 | 30710.9 | 5 | UniProt (W8VZW3) Pfam (PF01036) | Nonlabens marinus S1-08 | |
| 2 | DA, F, OA, S, YA (C, A, D, B, E) | RETINAL | non-polymer | 284.4 | 5 | Chemie (RET) | |||
| 3 | EA, G, PA, T, ZA (C, A, D, B, E) | (3~{S},4~{Z},6~{E},8~{Z},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]pentacosa-4,6,8,10,12,14,16,18,20,22,24-undecaene-2,3-diol | non-polymer | 584.9 | 5 | Chemie (A1L4O) | |||
| 4 | AB, BB, FA, GA, H... (E, C, A, D, B) | CHLORIDE ION | non-polymer | 35.5 | 10 | Chemie (CL) | |||
| 5 | CB, HA, J, SA, W (E, C, A, D, B) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 5 | Chemie (PC1) | |||
| 6 | IA, K, P, TA, X (C, A, D, B) | DIUNDECYL PHOSPHATIDYL CHOLINE | non-polymer | 622.8 | 5 | Chemie (PLC) | |||
| 7 | AA, BA, FB, L, M... (B, E, A, D) | HEXADECANE | non-polymer | 226.4 | 11 | Chemie (R16) | |||
| 8 | MA, N, R (C, A, B) | Octadecane | non-polymer | 254.5 | 3 | Chemie (8K6) | |||
| 9 | DB, O, WA (E, A, D) | DODECANE | non-polymer | 170.3 | 3 | Chemie (D12) | |||
| 10 | CA, EB, GB, JA, KA... (B, E, C) | TETRADECANE | non-polymer | 198.4 | 6 | Chemie (C14) | |||
| 11 | LA (C) | DECANE | non-polymer | 142.3 | 1 | Chemie (D10) | |||
| 12 | HB, IB, JB, KB, LB (A, B, C, D, E) | water | water | 18.0 | 187 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 272 (UniProt: W8VZW3)
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 153554.7 | |
| Non-Polymers* | Number of molecules | 54 |
| Total formula weight | 16863.9 | |
| All* | Total formula weight | 170418.6 |
