9JOV
Cryo-EM structure of the myxol-bound light-driven proton pumping rhodopsin, NM-R1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Proteorhodopsin | polymer | 254 | 28787.7 | 5 | UniProt (W8VZ92) | Nonlabens marinus S1-08 | NM-R1 |
| 2 | F, FA, NA, P, X (A, D, E, B, C) | RETINAL | non-polymer | 284.4 | 5 | Chemie (RET) PubChem (1070) PubChem (23254473) PubChem (177675058) PubChem (638015) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (5280490) PubChem (5353924) PubChem (5381765) PubChem (6436079) PubChem (6436082) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 3 | CA, DA, G, GA, H... (C, D, A, E, B) | HEXADECANE | non-polymer | 226.4 | 19 | Chemie (R16) PubChem (11006) | |||
| 4 | AA, EA, IA, J, K... (C, D, A, E, B) | DODECANE | non-polymer | 170.3 | 11 | Chemie (D12) PubChem (8182) PubChem (5359624) | |||
| 5 | BA, JA, L, RA, T (C, D, A, E, B) | (3~{S},4~{Z},6~{E},8~{Z},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]pentacosa-4,6,8,10,12,14,16,18,20,22,24-undecaene-2,3-diol | non-polymer | 584.9 | 5 | Chemie (A1L4O) PubChem (44237363) PubChem (73229466) PubChem (91149282) PubChem (139291909) PubChem (16061290) PubChem (176468804) | |||
| 6 | TA, UA, VA, WA, XA (A, B, C, D, E) | water | water | 18.0 | 90 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 246 (UniProt: W8VZ92)
| PDB | External Database | Details |
|---|---|---|
| Leu 247 | - | expression tag |
| Glu 248 | - | expression tag |
| Glu 249 | - | expression tag |
| Asn 250 | - | expression tag |
| Leu 251 | - | expression tag |
| Tyr 252 | - | expression tag |
| Phe 253 | - | expression tag |
| Gln 254 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 143938.7 | |
| Non-Polymers* | Number of molecules | 40 |
| Total formula weight | 10522.6 | |
| All* | Total formula weight | 154461.3 |
