9JOV
Cryo-EM structure of the myxol-bound light-driven proton pumping rhodopsin, NM-R1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Proteorhodopsin | polymer | 254 | 28787.7 | 5 | UniProt (W8VZ92) Pfam (PF01036) | Nonlabens marinus S1-08 | NM-R1 |
| 2 | F, FA, NA, P, X (A, D, E, B, C) | RETINAL | non-polymer | 284.4 | 5 | Chemie (RET) | |||
| 3 | CA, DA, G, GA, H... (C, D, A, E, B) | HEXADECANE | non-polymer | 226.4 | 19 | Chemie (R16) | |||
| 4 | AA, EA, IA, J, K... (C, D, A, E, B) | DODECANE | non-polymer | 170.3 | 11 | Chemie (D12) | |||
| 5 | BA, JA, L, RA, T (C, D, A, E, B) | (3~{S},4~{Z},6~{E},8~{Z},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]pentacosa-4,6,8,10,12,14,16,18,20,22,24-undecaene-2,3-diol | non-polymer | 584.9 | 5 | Chemie (A1L4O) | |||
| 6 | TA, UA, VA, WA, XA (A, B, C, D, E) | water | water | 18.0 | 90 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 246 (UniProt: W8VZ92)
| PDB | External Database | Details |
|---|---|---|
| Leu 247 | - | expression tag |
| Glu 248 | - | expression tag |
| Glu 249 | - | expression tag |
| Asn 250 | - | expression tag |
| Leu 251 | - | expression tag |
| Tyr 252 | - | expression tag |
| Phe 253 | - | expression tag |
| Gln 254 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 143938.7 | |
| Non-Polymers* | Number of molecules | 40 |
| Total formula weight | 10522.6 | |
| All* | Total formula weight | 154461.3 |
