9JOU
Cryo-EM structure of the zeaxanthin-bound light-driven proton pumping rhodopsin, NM-R1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Proteorhodopsin | polymer | 260 | 29481.5 | 5 | UniProt (W8VZ92) | Nonlabens marinus S1-08 | NM-R1 |
| 2 | BA, F, IA, N, U (D, A, E, B, C) | RETINAL | non-polymer | 284.4 | 5 | Chemie (RET) PubChem (23254473) PubChem (177675058) PubChem (5280490) PubChem (5381765) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (1070) PubChem (638015) PubChem (5353924) PubChem (6436079) PubChem (6436082) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 3 | AA, CA, DA, EA, G... (D, A, E, B, C) | HEXADECANE | non-polymer | 226.4 | 13 | Chemie (R16) PubChem (11006) | |||
| 4 | FA, HA, I, J, L... (D, E, A, B, C) | DODECANE | non-polymer | 170.3 | 12 | Chemie (D12) PubChem (8182) PubChem (5359624) | |||
| 5 | GA, K, NA, R, Z (D, A, E, B, C) | Zeaxanthin | non-polymer | 568.9 | 5 | Chemie (K3I) PubChem (20056730) PubChem (21159705) PubChem (21764392) PubChem (21769058) PubChem (21769059) PubChem (21769060) PubChem (21769062) PubChem (21769063) PubChem (21769064) PubChem (21769065) PubChem (21769066) PubChem (21769067) PubChem (21772452) PubChem (21769061) PubChem (177501301) PubChem (182034) PubChem (534748) PubChem (5280899) PubChem (5362770) PubChem (6442658) PubChem (123134094) PubChem (53477763) PubChem (53477766) PubChem (124526392) PubChem (124526390) PubChem (124928633) PubChem (12358764) PubChem (156349248) PubChem (163008512) PubChem (163008504) PubChem (168312934) PubChem (169423519) PubChem (90865182) PubChem (91325153) PubChem (102008443) PubChem (91445) PubChem (124526391) PubChem (124526393) PubChem (5315430) PubChem (124928631) PubChem (124928632) PubChem (12068233) PubChem (12358766) PubChem (152743347) PubChem (156349249) PubChem (162639641) PubChem (162679655) PubChem (163008505) PubChem (163008506) PubChem (163008507) PubChem (163008508) PubChem (163008509) PubChem (163008510) PubChem (163008511) PubChem (163008513) PubChem (167530384) | |||
| 6 | OA, PA, QA, RA, SA (A, B, C, D, E) | water | water | 18.0 | 51 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 1 - 246 (UniProt: W8VZ92)
| PDB | External Database | Details |
|---|---|---|
| Leu 247 | - | expression tag |
| Glu 248 | - | expression tag |
| Glu 249 | - | expression tag |
| Asn 250 | - | expression tag |
| Leu 251 | - | expression tag |
| Tyr 252 | - | expression tag |
| Phe 253 | - | expression tag |
| Gln 254 | - | expression tag |
| Gly 255 | - | expression tag |
| Trp 256 | - | expression tag |
| Ser 257 | - | expression tag |
| His 258 | - | expression tag |
| Pro 259 | - | expression tag |
| Gln 260 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 147407.3 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 9254.3 | |
| All* | Total formula weight | 156661.6 |
