9JO8
Cryo-EM structure of the mono-DdCBE bound to a dsDNA substrate.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | TALE repeat protein targeting mitochondiral ND1-L gene. | polymer | 679 | 70525.0 | 1 | UniProt (by SIFTS) (A0A7T8FYG6) | Xanthomonas | |
| 2 | B (B) | TALE repeat protein recognized single-strand DNA sequence and mitochondrial ND4 gene sequence. | polymer | 33 | 10064.5 | 1 | Homo sapiens | ||
| 3 | C (C) | a complementary strand of TALE repeat protein recognized single-strand DNA sequence and a complementary strand of mitochondrial ND4 gene sequence. | polymer | 33 | 10233.6 | 1 | Homo sapiens | ||
| 4 | D (D) | Double-stranded DNA deaminase toxin A | polymer | 133 | 13964.7 | 1 | UniProt (P0DUH5) | Burkholderia cenocepacia H111 | DddA,Cytidine deaminase,CD |
| 5 | E (D) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 6 | F (A) | water | water | 18.0 | 1 | Chemie (HOH) |
Sequence modifications
D: 1290 - 1422 (UniProt: P0DUH5)
| PDB | External Database | Details |
|---|---|---|
| Gly 1326 | Ser 1326 | engineered mutation |
| Ile 1330 | Ser 1330 | engineered mutation |
| Val 1341 | Ala 1341 | engineered mutation |
| Ser 1342 | Asn 1342 | engineered mutation |
| Ser 1348 | Gly 1348 | engineered mutation |
| Lys 1370 | Glu 1370 | engineered mutation |
| Ile 1380 | Thr 1380 | engineered mutation |
| Val 1398 | Ala 1398 | engineered mutation |
| Ile 1413 | Thr 1413 | engineered mutation |
| Gly 1418 | Ser 1418 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 104787.8 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 104853.2 |
