9JMP
Cryo-EM structure of GD-BatCoV (BtCoV/Ii/GD/2014-422) S-trimer
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin | polymer | 1373 | 151327.0 | 3 | UniProt (A0A2R4KP93) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Middle East respiratory syndrome-related coronavirus | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
| 2 | D, F, G, I, J... (D, F, G, I, J...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
| 3 | E, H, M (E, H, M) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 4 | AA, BA, CA, DA, GA... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) | |||
| 5 | EA, FA, W (B, C, A) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) |
Sequence modifications
A, B, C: 1 - 1294 (UniProt: A0A2R4KP93)
A, B, C: 1297 - 1323 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| Pro 885 | Ala 885 | engineered mutation |
| Pro 962 | Ser 962 | engineered mutation |
| Pro 969 | Ala 969 | engineered mutation |
| Pro 1012 | Asn 1012 | engineered mutation |
| Pro 1056 | Ala 1056 | engineered mutation |
| Pro 1057 | Val 1057 | engineered mutation |
| Gly 1295 | - | linker |
| Ser 1296 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 1318 | Phe 479 | conflict |
| Leu 1324 | - | expression tag |
| Glu 1325 | - | expression tag |
| Val 1326 | - | expression tag |
| Leu 1327 | - | expression tag |
| Phe 1328 | - | expression tag |
| Gln 1329 | - | expression tag |
| Gly 1330 | - | expression tag |
| Pro 1331 | - | expression tag |
| Gly 1332 | - | expression tag |
| His 1333 | - | expression tag |
| His 1334 | - | expression tag |
| His 1335 | - | expression tag |
| His 1336 | - | expression tag |
| His 1337 | - | expression tag |
| His 1338 | - | expression tag |
| His 1339 | - | expression tag |
| His 1340 | - | expression tag |
| Ser 1341 | - | expression tag |
| Ala 1342 | - | expression tag |
| Trp 1343 | - | expression tag |
| Ser 1344 | - | expression tag |
| His 1345 | - | expression tag |
| Pro 1346 | - | expression tag |
| Gln 1347 | - | expression tag |
| Phe 1348 | - | expression tag |
| Glu 1349 | - | expression tag |
| Lys 1350 | - | expression tag |
| Gly 1351 | - | expression tag |
| Gly 1352 | - | expression tag |
| Gly 1353 | - | expression tag |
| Ser 1354 | - | expression tag |
| Gly 1355 | - | expression tag |
| Gly 1356 | - | expression tag |
| Gly 1357 | - | expression tag |
| Gly 1358 | - | expression tag |
| Ser 1359 | - | expression tag |
| Gly 1360 | - | expression tag |
| Gly 1361 | - | expression tag |
| Ser 1362 | - | expression tag |
| Ala 1363 | - | expression tag |
| Trp 1364 | - | expression tag |
| Ser 1365 | - | expression tag |
| His 1366 | - | expression tag |
| Pro 1367 | - | expression tag |
| Gln 1368 | - | expression tag |
| Phe 1369 | - | expression tag |
| Glu 1370 | - | expression tag |
| Lys 1371 | - | expression tag |
| Ser 1372 | - | expression tag |
| Ala 1373 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 453980.9 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5579.2 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 5486.7 | |
| All* | Total formula weight | 465046.8 |
