9JMO

Cryo-EM structure of Japan-BatCoV (Vs-CoV-1) S-trimer

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (A, B, C)	Spike glycoprotein,Fibritin	polymer	1369	151802.4	3	UniProt (A0A5H2WTJ3) UniProt (P10104) Pfam (PF07921)	Bat coronavirus	Collar protein,Whisker antigen control protein
2	D, G, H, I, J... (D, G, H, I, J...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	11	In PDB GlyTouCan (G42666HT)
3	E, F, K, L, P... (E, F, K, L, P...)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	6	In PDB GlyTouCan (G15407YE)
4	AA, AB, BA, BB, CA... (A, C, B)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	31	Chemie (NAG)
5	EA, PA, QA (A, B, C)	LINOLEIC ACID	non-polymer		280.4	3	Chemie (EIC)

Sequence modifications

A, B, C: 1 - 1290 (UniProt: A0A5H2WTJ3)

PDB	External Database	Details
Gly 1291	-	linker
Ser 1292	-	linker

A, B, C: 1293 - 1319 (UniProt: P10104)

PDB	External Database	Details
Leu 1314	Phe 479	conflict
Leu 1320	-	expression tag
Glu 1321	-	expression tag
Val 1322	-	expression tag
Leu 1323	-	expression tag
Phe 1324	-	expression tag
Gln 1325	-	expression tag
Gly 1326	-	expression tag
Pro 1327	-	expression tag
Gly 1328	-	expression tag
His 1329	-	expression tag
His 1330	-	expression tag
His 1331	-	expression tag
His 1332	-	expression tag
His 1333	-	expression tag
His 1334	-	expression tag
His 1335	-	expression tag
His 1336	-	expression tag
Ser 1337	-	expression tag
Ala 1338	-	expression tag
Trp 1339	-	expression tag
Ser 1340	-	expression tag
His 1341	-	expression tag
Pro 1342	-	expression tag
Gln 1343	-	expression tag
Phe 1344	-	expression tag
Glu 1345	-	expression tag
Lys 1346	-	expression tag
Gly 1347	-	expression tag
Gly 1348	-	expression tag
Gly 1349	-	expression tag
Ser 1350	-	expression tag
Gly 1351	-	expression tag
Gly 1352	-	expression tag
Gly 1353	-	expression tag
Gly 1354	-	expression tag
Ser 1355	-	expression tag
Gly 1356	-	expression tag
Gly 1357	-	expression tag
Ser 1358	-	expression tag
Ala 1359	-	expression tag
Trp 1360	-	expression tag
Ser 1361	-	expression tag
His 1362	-	expression tag
Pro 1363	-	expression tag
Gln 1364	-	expression tag
Phe 1365	-	expression tag
Glu 1366	-	expression tag
Lys 1367	-	expression tag
Ser 1368	-	expression tag
Ala 1369	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	3
	Total formula weight	455407.2
Branched	Number of molecules	17
	Total formula weight	8187.7
Non-Polymers*	Number of molecules	34
	Total formula weight	7698.8
All*	Total formula weight	471293.6

*Water molecules are not included.