9JMG
Cryo-EM structure of EU-HedgehogCoV (Erinaceus/VMC/DEU/2012) S-trimer in a locked-2 conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin | polymer | 1353 | 149867.7 | 3 | UniProt (U5LMM7) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Betacoronavirus Erinaceus/VMC/DEU/2012 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
| 2 | D, E, F, H, I... (D, E, F, H, I...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 3 | G, J (G, J) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 4 | AA, AB, BA, CA, DA... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 37 | Chemie (NAG) | |||
| 5 | BB, LA, Y (C, B, A) | FOLIC ACID | non-polymer | 441.4 | 3 | Chemie (FOL) | |||
| 6 | NA, OA, Z (B, C, A) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) |
Sequence modifications
A, B, C: 1 - 1274 (UniProt: U5LMM7)
A, B, C: 1277 - 1303 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| Gly 1275 | - | linker |
| Ser 1276 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 1298 | Phe 479 | conflict |
| Leu 1304 | - | expression tag |
| Glu 1305 | - | expression tag |
| Val 1306 | - | expression tag |
| Leu 1307 | - | expression tag |
| Phe 1308 | - | expression tag |
| Gln 1309 | - | expression tag |
| Gly 1310 | - | expression tag |
| Pro 1311 | - | expression tag |
| Gly 1312 | - | expression tag |
| His 1313 | - | expression tag |
| His 1314 | - | expression tag |
| His 1315 | - | expression tag |
| His 1316 | - | expression tag |
| His 1317 | - | expression tag |
| His 1318 | - | expression tag |
| His 1319 | - | expression tag |
| His 1320 | - | expression tag |
| Ser 1321 | - | expression tag |
| Ala 1322 | - | expression tag |
| Trp 1323 | - | expression tag |
| Ser 1324 | - | expression tag |
| His 1325 | - | expression tag |
| Pro 1326 | - | expression tag |
| Gln 1327 | - | expression tag |
| Phe 1328 | - | expression tag |
| Glu 1329 | - | expression tag |
| Lys 1330 | - | expression tag |
| Gly 1331 | - | expression tag |
| Gly 1332 | - | expression tag |
| Gly 1333 | - | expression tag |
| Ser 1334 | - | expression tag |
| Gly 1335 | - | expression tag |
| Gly 1336 | - | expression tag |
| Gly 1337 | - | expression tag |
| Gly 1338 | - | expression tag |
| Ser 1339 | - | expression tag |
| Gly 1340 | - | expression tag |
| Gly 1341 | - | expression tag |
| Ser 1342 | - | expression tag |
| Ala 1343 | - | expression tag |
| Trp 1344 | - | expression tag |
| Ser 1345 | - | expression tag |
| His 1346 | - | expression tag |
| Pro 1347 | - | expression tag |
| Gln 1348 | - | expression tag |
| Phe 1349 | - | expression tag |
| Glu 1350 | - | expression tag |
| Lys 1351 | - | expression tag |
| Ser 1352 | - | expression tag |
| Ala 1353 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 449603.0 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 4368.1 | |
| Non-Polymers* | Number of molecules | 43 |
| Total formula weight | 10350.2 | |
| All* | Total formula weight | 464321.3 |
