9JMF
Cryo-EM structure of SA-BatCoV (Neoromicia/PML-PHE1/RSA/2011) S-trimer
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin | polymer | 1366 | 150805.0 | 3 | UniProt (U5NJG5) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Coronavirus Neoromicia/PML-PHE1/RSA/2011 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
| 2 | D, E, F, G, H... (D, E, F, G, H...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
| 3 | AA, AB, BA, CA, EA... (A, C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) | |||
| 4 | BB, DA, PA (C, A, B) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) |
Sequence modifications
A, B, C: 1 - 1287 (UniProt: U5NJG5)
A, B, C: 1290 - 1316 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| Gly 1288 | - | linker |
| Ser 1289 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 1311 | Phe 479 | conflict |
| Leu 1317 | - | expression tag |
| Glu 1318 | - | expression tag |
| Val 1319 | - | expression tag |
| Leu 1320 | - | expression tag |
| Phe 1321 | - | expression tag |
| Gln 1322 | - | expression tag |
| Gly 1323 | - | expression tag |
| Pro 1324 | - | expression tag |
| Gly 1325 | - | expression tag |
| His 1326 | - | expression tag |
| His 1327 | - | expression tag |
| His 1328 | - | expression tag |
| His 1329 | - | expression tag |
| His 1330 | - | expression tag |
| His 1331 | - | expression tag |
| His 1332 | - | expression tag |
| His 1333 | - | expression tag |
| Ser 1334 | - | expression tag |
| Ala 1335 | - | expression tag |
| Trp 1336 | - | expression tag |
| Ser 1337 | - | expression tag |
| His 1338 | - | expression tag |
| Pro 1339 | - | expression tag |
| Gln 1340 | - | expression tag |
| Phe 1341 | - | expression tag |
| Glu 1342 | - | expression tag |
| Lys 1343 | - | expression tag |
| Gly 1344 | - | expression tag |
| Gly 1345 | - | expression tag |
| Gly 1346 | - | expression tag |
| Ser 1347 | - | expression tag |
| Gly 1348 | - | expression tag |
| Gly 1349 | - | expression tag |
| Gly 1350 | - | expression tag |
| Gly 1351 | - | expression tag |
| Ser 1352 | - | expression tag |
| Gly 1353 | - | expression tag |
| Gly 1354 | - | expression tag |
| Ser 1355 | - | expression tag |
| Ala 1356 | - | expression tag |
| Trp 1357 | - | expression tag |
| Ser 1358 | - | expression tag |
| His 1359 | - | expression tag |
| Pro 1360 | - | expression tag |
| Gln 1361 | - | expression tag |
| Phe 1362 | - | expression tag |
| Glu 1363 | - | expression tag |
| Lys 1364 | - | expression tag |
| Ser 1365 | - | expression tag |
| Ala 1366 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 452415.0 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 6366.0 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 8141.2 | |
| All* | Total formula weight | 466922.2 |
