9JFN

Arginine decarboxylase in Aspergillus oryzae complexed with agmatine

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, C, E, G (A, B, C, D)	L-tryptophan decarboxylase PsiD-like domain-containing protein	polymer	462	51174.1	4	UniProt (Q2UAM5) Pfam (PF12588) Pfam (PF02666)	Aspergillus oryzae RIB40
2	B, D, F, H (E, F, G, H)	L-tryptophan decarboxylase PsiD-like domain-containing protein	polymer	42	4678.4	4	UniProt (Q2UAM5)	Aspergillus oryzae RIB40
3	AB, BC, CC, I, WA... (B, C, A)	DI(HYDROXYETHYL)ETHER	non-polymer		106.1	8	Chemie (PEG)
4	AA, AC, AD, AE, BA... (A, F, C, D, B...)	1,2-ETHANEDIOL	non-polymer		62.1	124	Chemie (EDO)
5	ID, ME, UA, ZB (G, H, E, F)	AGMATINE	non-polymer		130.2	4	Chemie (AG2)
6	OE, PE, QE, RE, SE... (A, E, B, F, C...)	water	water		18.0	1317	Chemie (HOH)

Sequence modifications

A, B, C, D: 1 - 442 (UniProt: Q2UAM5)

PDB	External Database	Details
Met -19	-	initiating methionine
Gly -18	-	expression tag
Ser -17	-	expression tag
Ser -16	-	expression tag
His -15	-	expression tag
His -14	-	expression tag
His -13	-	expression tag
His -12	-	expression tag
His -11	-	expression tag
His -10	-	expression tag
Ser -9	-	expression tag
Ser -8	-	expression tag
Gly -7	-	expression tag
Leu -6	-	expression tag
Val -5	-	expression tag
Pro -4	-	expression tag
Arg -3	-	expression tag
Gly -2	-	expression tag
Ser -1	-	expression tag
His 0	-	expression tag

E, F, G, H: 503 - 543 (UniProt: Q2UAM5)

PDB	External Database	Details
Pyr 502	-	modified residue

Contents of the asymmetric unit

Polymers	Number of chains	8
	Total formula weight	223409.8
Non-Polymers*	Number of molecules	136
	Total formula weight	9066.2
All*	Total formula weight	232476.0

*Water molecules are not included.