9J9I
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 28S ribosomal RNA | polymer | 3789 | 1216541.3 | 1 | Plasmodium falciparum 3D7 | ||
| 2 | B (AA) | Small ribosomal subunit protein eS12 | polymer | 141 | 15414.4 | 1 | UniProt (O97249) Pfam (PF01248) | Plasmodium falciparum 3D7 | 40S ribosomal protein S12 |
| 3 | C (j) | 18S ribosomal RNA | polymer | 2092 | 671337.5 | 1 | Plasmodium falciparum 3D7 | ||
| 4 | D (AH) | 40S ribosomal protein S19 | polymer | 170 | 19757.9 | 1 | UniProt (Q8IFP2) Pfam (PF01090) | Plasmodium falciparum 3D7 | |
| 5 | E (B) | 5S ribosomal RNA | polymer | 119 | 38410.9 | 1 | Plasmodium falciparum 3D7 | ||
| 6 | F (AB) | 40S ribosomal protein S18, putative | polymer | 156 | 17928.9 | 1 | UniProt (Q8IIA2) Pfam (PF00416) | Plasmodium falciparum 3D7 | |
| 7 | G (k) | Small ribosomal subunit protein eS1 | polymer | 262 | 30111.7 | 1 | UniProt (O97313) Pfam (PF01015) | Plasmodium falciparum 3D7 | 40S ribosomal protein S3a |
| 8 | H (C) | 5.8S ribosomal RNA | polymer | 159 | 51206.5 | 1 | GenBank (1060141538) | Plasmodium falciparum 3D7 | |
| 9 | I (AC) | 40S ribosomal protein S29, putative | polymer | 54 | 6430.7 | 1 | UniProt (C0H4K8) Pfam (PF00253) | Plasmodium falciparum 3D7 | |
| 10 | J (l) | Small ribosomal subunit protein uS2 | polymer | 263 | 29891.2 | 1 | UniProt (Q8IJD4) Pfam (PF00318) | Plasmodium falciparum 3D7 | 40S ribosomal protein S2,40S ribosomal protein SA |
| 11 | K (D) | 60S ribosomal protein L2 | polymer | 260 | 28065.0 | 1 | UniProt (Q8I3T9) Pfam (PF00181) Pfam (PF03947) | Plasmodium falciparum 3D7 | |
| 12 | L (0) | 60S ribosomal protein L24, putative | polymer | 162 | 19295.9 | 1 | UniProt (Q8IEM3) Pfam (PF01246) | Plasmodium falciparum 3D7 | |
| 13 | M (n) | 40S ribosomal protein S9, putative | polymer | 189 | 22172.1 | 1 | UniProt (Q8I3R0) Pfam (PF00163) Pfam (PF01479) | Plasmodium falciparum 3D7 | |
| 14 | N (E) | 60S ribosomal protein L3 | polymer | 386 | 44318.2 | 1 | UniProt (Q8IJC6) Pfam (PF00297) | Plasmodium falciparum 3D7 | |
| 15 | O (1) | 60S ribosomal protein L27 | polymer | 146 | 16785.2 | 1 | UniProt (Q8IKM5) Pfam (PF01777) | Plasmodium falciparum 3D7 | |
| 16 | P (o) | 40S ribosomal protein S4 | polymer | 261 | 29830.3 | 1 | UniProt (Q8IIU8) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Plasmodium falciparum 3D7 | |
| 17 | Q (F) | 60S ribosomal protein L4 | polymer | 411 | 46311.7 | 1 | UniProt (Q8I431) Pfam (PF00573) Pfam (PF14374) | Plasmodium falciparum 3D7 | |
| 18 | R (2) | 60S ribosomal protein L28 | polymer | 127 | 14437.8 | 1 | UniProt (Q8IHU0) Pfam (PF01778) | Plasmodium falciparum 3D7 | |
| 19 | S (p) | 40S ribosomal protein S5 | polymer | 272 | 30008.8 | 1 | UniProt (Q8IL02) Pfam (PF00333) Pfam (PF03719) | Plasmodium falciparum 3D7 | |
| 20 | T (G) | 60S ribosomal protein L11a, putative | polymer | 173 | 20268.7 | 1 | UniProt (Q8IBQ6) Pfam (PF00281) Pfam (PF00673) | Plasmodium falciparum 3D7 | |
| 21 | U (3) | 60S ribosomal protein L35, putative | polymer | 124 | 14787.8 | 1 | UniProt (Q8IIB4) Pfam (PF00831) | Plasmodium falciparum 3D7 | |
| 22 | V (q) | 40S ribosomal protein S6 | polymer | 306 | 35473.8 | 1 | UniProt (Q8IDR9) Pfam (PF01092) | Plasmodium falciparum 3D7 | |
| 23 | W (H) | 60S ribosomal protein L6, putative | polymer | 190 | 21638.6 | 1 | UniProt (Q8IE85) Pfam (PF00347) | Plasmodium falciparum 3D7 | |
| 24 | X (4) | 60S ribosomal protein L29 | polymer | 67 | 8041.6 | 1 | UniProt (C6S3J6) Pfam (PF01779) | Plasmodium falciparum 3D7 | |
| 25 | Y (s) | 40S ribosomal protein S7 | polymer | 194 | 22524.7 | 1 | UniProt (Q8IET7) Pfam (PF01251) | Plasmodium falciparum 3D7 | |
| 26 | Z (I) | 60S ribosomal protein L6, putative | polymer | 221 | 25587.6 | 1 | UniProt (A0A5K1K8V8) Pfam (PF01159) | Plasmodium falciparum 3D7 | |
| 27 | AA (5) | 60S ribosomal protein L7, putative | polymer | 257 | 30593.2 | 1 | UniProt (O97250) Pfam (PF08079) Pfam (PF00327) | Plasmodium falciparum 3D7 | |
| 28 | BA (t) | 40S ribosomal protein S15A, putative | polymer | 130 | 14900.7 | 1 | UniProt (O77395) Pfam (PF00410) | Plasmodium falciparum 3D7 | |
| 29 | CA (J) | 60S ribosomal protein L7a | polymer | 283 | 32760.5 | 1 | UniProt (Q8ILL2) Pfam (PF01248) | Plasmodium falciparum 3D7 | |
| 30 | DA (6) | 60S ribosomal protein L30e, putative | polymer | 108 | 11794.8 | 1 | UniProt (Q8IJK8) Pfam (PF01248) | Plasmodium falciparum 3D7 | |
| 31 | EA (u) | 40S ribosomal protein S8 | polymer | 218 | 25106.0 | 1 | UniProt (Q8IM10) Pfam (PF01201) | Plasmodium falciparum 3D7 | |
| 32 | FA (K) | 60S ribosomal protein L13, putative | polymer | 202 | 23805.3 | 1 | UniProt (Q8IJZ7) Pfam (PF00572) | Plasmodium falciparum 3D7 | |
| 33 | GA (7) | 60S ribosomal protein L31 | polymer | 120 | 14099.9 | 1 | UniProt (Q8I463) Pfam (PF01198) | Plasmodium falciparum 3D7 | |
| 34 | HA (y) | 40S ribosomal protein S11 | polymer | 151 | 16105.6 | 1 | UniProt (A0A5K1K925) Pfam (PF00411) | Plasmodium falciparum 3D7 | |
| 35 | IA (L) | 60S ribosomal protein L13 | polymer | 215 | 25508.2 | 1 | UniProt (Q8IAX6) Pfam (PF01294) | Plasmodium falciparum 3D7 | |
| 36 | JA (8) | 60S ribosomal protein L32 | polymer | 131 | 15565.8 | 1 | UniProt (Q8I3B0) Pfam (PF01655) | Plasmodium falciparum 3D7 | |
| 37 | KA (z) | 40S ribosomal protein S23, putative | polymer | 145 | 16167.0 | 1 | UniProt (O97248) Pfam (PF00164) | Plasmodium falciparum 3D7 | |
| 38 | LA (M) | 60S ribosomal protein L23, putative | polymer | 139 | 15015.7 | 1 | UniProt (Q8IE09) Pfam (PF00238) | Plasmodium falciparum 3D7 | |
| 39 | MA (9) | 60S ribosomal protein L35ae, putative | polymer | 140 | 16306.4 | 1 | UniProt (Q8IHT9) Pfam (PF01247) | Plasmodium falciparum 3D7 | |
| 40 | NA (AD) | 40S ribosomal protein S15 | polymer | 151 | 17286.5 | 1 | UniProt (Q8IDB0) Pfam (PF08069) Pfam (PF00312) | Plasmodium falciparum 3D7 | |
| 41 | OA (N) | 60S ribosomal protein L14, putative | polymer | 165 | 19340.4 | 1 | UniProt (Q8ILE8) Pfam (PF01929) | Plasmodium falciparum 3D7 | |
| 42 | PA (a) | 60S ribosomal protein L34 | polymer | 150 | 17407.0 | 1 | UniProt (Q8IBY4) Pfam (PF01199) | Plasmodium falciparum 3D7 | |
| 43 | QA (AE) | 40S ribosomal protein S11, putative | polymer | 161 | 18801.2 | 1 | UniProt (O77381) Pfam (PF16205) Pfam (PF00366) | Plasmodium falciparum 3D7 | |
| 44 | RA (O) | 60S ribosomal protein L27a, putative | polymer | 148 | 16765.8 | 1 | UniProt (C6KT23) Pfam (PF00828) | Plasmodium falciparum 3D7 | |
| 45 | SA (b) | 60S ribosomal protein L36 | polymer | 112 | 12825.4 | 1 | UniProt (Q8I713) Pfam (PF01158) | Plasmodium falciparum 3D7 | |
| 46 | TA (AI) | 40S ribosomal protein S21 | polymer | 82 | 9157.5 | 1 | UniProt (Q8IHS5) Pfam (PF01249) | Plasmodium falciparum 3D7 | |
| 47 | UA (P) | Ribosomal protein L15 | polymer | 205 | 24197.7 | 1 | UniProt (C0H4A6) Pfam (PF00827) | Plasmodium falciparum 3D7 | |
| 48 | VA (c) | Ribosomal protein L37 | polymer | 92 | 10571.6 | 1 | UniProt (C0H4L5) Pfam (PF01907) | Plasmodium falciparum 3D7 | |
| 49 | WA (AQ) | tRNA | polymer | 74 | 23774.1 | 1 | GenBank (1060142279) | Plasmodium falciparum 3D7 | |
| 50 | XA (Q) | 60S ribosomal protein L10, putative | polymer | 219 | 25265.5 | 1 | UniProt (Q8ILV2) Pfam (PF00252) | Plasmodium falciparum 3D7 | |
| 51 | YA (d) | 60S ribosomal protein L38 | polymer | 87 | 10341.7 | 1 | UniProt (Q8II62) Pfam (PF01781) | Plasmodium falciparum 3D7 | |
| 52 | ZA (AK) | 40S ribosomal protein S25 | polymer | 105 | 11691.9 | 1 | UniProt (Q8ILN8) Pfam (PF03297) | Plasmodium falciparum 3D7 | |
| 53 | AB (R) | 60S ribosomal protein L5, putative | polymer | 294 | 34067.4 | 1 | UniProt (Q8ILL3) Pfam (PF17144) Pfam (PF14204) | Plasmodium falciparum 3D7 | |
| 54 | BB (e) | 60S ribosomal protein L39 | polymer | 51 | 6540.9 | 1 | UniProt (C0H4H3) Pfam (PF00832) | Plasmodium falciparum 3D7 | |
| 55 | CB (AN) | 40S ribosomal protein S28e, putative | polymer | 67 | 7508.8 | 1 | UniProt (Q8IKL9) Pfam (PF01200) | Plasmodium falciparum 3D7 | |
| 56 | DB (S) | 60S ribosomal protein L18-2, putative | polymer | 187 | 21508.8 | 1 | UniProt (C0H5G3) Pfam (PF17135) | Plasmodium falciparum 3D7 | |
| 57 | EB (f) | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14645.2 | 1 | UniProt (Q8ID50) Pfam (PF00240) Pfam (PF01020) | Plasmodium falciparum 3D7 | |
| 58 | FB (AP) | Ribosomal protein S27a, putative | polymer | 149 | 17437.7 | 1 | UniProt (Q8IM64) Pfam (PF00240) Pfam (PF01599) | Plasmodium falciparum 3D7 | |
| 59 | GB (T) | 60S ribosomal protein L19 | polymer | 182 | 21641.1 | 1 | UniProt (C6KSY6) Pfam (PF01280) | Plasmodium falciparum 3D7 | |
| 60 | HB (g) | 60S ribosomal protein L41 | polymer | 39 | 5108.3 | 1 | UniProt (C6S3G4) Pfam (PF05162) | Plasmodium falciparum 3D7 | |
| 61 | IB (m) | 40S ribosomal protein S3 | polymer | 221 | 24709.9 | 1 | UniProt (Q8IKH8) Pfam (PF07650) Pfam (PF00189) | Plasmodium falciparum 3D7 | |
| 62 | JB (U) | 60S ribosomal protein L18a | polymer | 184 | 21793.6 | 1 | UniProt (Q8IDS6) Pfam (PF01775) | Plasmodium falciparum 3D7 | |
| 63 | KB (h) | Large ribosomal subunit protein eL43 | polymer | 96 | 10826.1 | 1 | UniProt (O96184) Pfam (PF01780) | Plasmodium falciparum 3D7 | 60S ribosomal protein L37a |
| 64 | LB (r) | 40S ribosomal protein S5, putative | polymer | 195 | 21898.5 | 1 | UniProt (Q8IBN5) Pfam (PF00177) | Plasmodium falciparum 3D7 | |
| 65 | MB (V) | 60S ribosomal protein L21 | polymer | 161 | 18840.2 | 1 | UniProt (Q8ILK3) Pfam (PF01157) | Plasmodium falciparum 3D7 | |
| 66 | NB (i) | Large ribosomal subunit protein eL42 | polymer | 104 | 12194.9 | 1 | UniProt (O97231) Pfam (PF00935) | Plasmodium falciparum 3D7 | 60S ribosomal protein L44 |
| 67 | OB (v) | 40S ribosomal protein S16, putative | polymer | 144 | 16318.2 | 1 | UniProt (Q8IAX5) Pfam (PF00380) | Plasmodium falciparum 3D7 | |
| 68 | PB (W) | 60S ribosomal protein L17, putative | polymer | 203 | 23469.9 | 1 | UniProt (Q8IDI5) Pfam (PF00237) | Plasmodium falciparum 3D7 | |
| 69 | QB (AJ) | 40S ribosomal protein S24 | polymer | 133 | 15431.5 | 1 | UniProt (Q8I3R6) Pfam (PF01282) | Plasmodium falciparum 3D7 | |
| 70 | RB (w) | 40S ribosomal protein S20e, putative | polymer | 118 | 13534.9 | 1 | UniProt (Q8IK02) Pfam (PF00338) | Plasmodium falciparum 3D7 | |
| 71 | SB (X) | Large ribosomal subunit protein eL22 | polymer | 139 | 16422.9 | 1 | UniProt (Q8IB51) Pfam (PF01776) | Plasmodium falciparum 3D7 | 60S ribosomal protein L22 |
| 72 | TB (AL) | 40S ribosomal protein S26 | polymer | 107 | 12539.7 | 1 | UniProt (O96258) Pfam (PF01283) | Plasmodium falciparum 3D7 | |
| 73 | UB (x) | 40S ribosomal protein S10, putative | polymer | 137 | 16510.2 | 1 | UniProt (Q8IBQ5) Pfam (PF03501) | Plasmodium falciparum 3D7 | |
| 74 | VB (Y) | 60S ribosomal protein L23 | polymer | 190 | 22152.7 | 1 | UniProt (Q8IE82) Pfam (PF03939) Pfam (PF00276) | Plasmodium falciparum 3D7 | |
| 75 | WB (AM) | 40S ribosomal protein S27 | polymer | 82 | 9154.9 | 1 | UniProt (Q8IEN2) Pfam (PF01667) | Plasmodium falciparum 3D7 | |
| 76 | XB (AF) | 40S ribosomal protein S17, putative | polymer | 137 | 16097.0 | 1 | UniProt (Q8I502) Pfam (PF00833) | Plasmodium falciparum 3D7 | |
| 77 | YB (Z) | 60S ribosomal protein L26, putative | polymer | 126 | 14855.7 | 1 | UniProt (O77364) Pfam (PF16906) Pfam (PF00467) | Plasmodium falciparum 3D7 | |
| 78 | ZB (AO) | Small ribosomal subunit protein eS30 | polymer | 58 | 6508.7 | 1 | UniProt (O96269) Pfam (PF04758) | Plasmodium falciparum 3D7 | 40S ribosomal protein S30 |
| 79 | AC (AG) | 40S ribosomal protein S19 | polymer | 145 | 16800.8 | 1 | UniProt (C0H5C2) Pfam (PF00203) | Plasmodium falciparum 3D7 | |
| 80 | AD, AE, AF, AG, AH... (A, j, AH, X, B...) | MAGNESIUM ION | non-polymer | 24.3 | 254 | Chemie (MG) | |||
| 81 | LL, RL, SL, UL, VL... (AC, a, c, f, h...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 79 |
| Total formula weight | 3410252.3 | |
| Non-Polymers* | Number of molecules | 260 |
| Total formula weight | 6565.9 | |
| All* | Total formula weight | 3416818.2 |
