9J5U
Cryo-EM structure of Bat SARS-like coronavirus Khosta-2 spike protein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1229 | 136230.7 | 3 | UniProt (A0A8E6HRK4) | Bat SARS-like coronavirus Khosta-2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, F, G, J (D, F, G, J) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 4 | In PDB GlyTouCan (G15407YE) | |||
| 3 | AA, E, H, N, S... (a, E, H, N, S...) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 6 | In PDB GlyTouCan (G81315DD) | |||
| 4 | I (I) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G22573RC) | |||
| 5 | BA, K, M, O, P... (b, K, M, O, P...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 6 | L, T (L, T) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 383.3 | 2 | In PDB GlyTouCan (G90333CG) | |||
| 7 | BB, CA, DA, EA, FA... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 20 | Chemie (NAG) | |||
| 8 | AB, IA, TA (C, A, B) | BILIVERDINE IX ALPHA | non-polymer | 582.6 | 3 | Chemie (BLA) | |||
| 9 | KA, LA, SA (A, B) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) |
Sequence modifications
A, B, C: 14 - 1194 (UniProt: A0A8E6HRK4)
| PDB | External Database | Details |
|---|---|---|
| Pro 797 | Phe 797 | conflict |
| Pro 872 | Ala 872 | conflict |
| Pro 879 | Ala 879 | conflict |
| Pro 922 | Ala 922 | conflict |
| Pro 966 | Lys 966 | conflict |
| Pro 967 | Val 967 | conflict |
| Gly 1195 | - | expression tag |
| Gly 1196 | - | expression tag |
| Gly 1197 | - | expression tag |
| Ser 1198 | - | expression tag |
| Gly 1199 | - | expression tag |
| Gly 1200 | - | expression tag |
| Gly 1201 | - | expression tag |
| Ser 1202 | - | expression tag |
| Gly 1203 | - | expression tag |
| Tyr 1204 | - | expression tag |
| Ile 1205 | - | expression tag |
| Pro 1206 | - | expression tag |
| Glu 1207 | - | expression tag |
| Ala 1208 | - | expression tag |
| Pro 1209 | - | expression tag |
| Arg 1210 | - | expression tag |
| Asp 1211 | - | expression tag |
| Gly 1212 | - | expression tag |
| Gln 1213 | - | expression tag |
| Ala 1214 | - | expression tag |
| Tyr 1215 | - | expression tag |
| Val 1216 | - | expression tag |
| Arg 1217 | - | expression tag |
| Lys 1218 | - | expression tag |
| Asp 1219 | - | expression tag |
| Gly 1220 | - | expression tag |
| Glu 1221 | - | expression tag |
| Trp 1222 | - | expression tag |
| Val 1223 | - | expression tag |
| Leu 1224 | - | expression tag |
| Leu 1225 | - | expression tag |
| Ser 1226 | - | expression tag |
| Thr 1227 | - | expression tag |
| Phe 1228 | - | expression tag |
| Leu 1229 | - | expression tag |
| Gly 1230 | - | expression tag |
| Gly 1231 | - | expression tag |
| Gly 1232 | - | expression tag |
| Ser 1233 | - | expression tag |
| Ala 1234 | - | expression tag |
| Trp 1235 | - | expression tag |
| Ser 1236 | - | expression tag |
| His 1237 | - | expression tag |
| Pro 1238 | - | expression tag |
| Gln 1239 | - | expression tag |
| Phe 1240 | - | expression tag |
| Glu 1241 | - | expression tag |
| Lys 1242 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 408692.2 | |
| Branched | Number of molecules | 25 |
| Total formula weight | 13446.5 | |
| Non-Polymers* | Number of molecules | 26 |
| Total formula weight | 7013.4 | |
| All* | Total formula weight | 429152.0 |
