9J4V
Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | HLA class I histocompatibility antigen, B alpha chain | polymer | 276 | 32093.2 | 2 | UniProt (P01889) Pfam (PF00129) Pfam (PF07654) | Homo sapiens (human) | Human leukocyte antigen B,HLA-B |
| 2 | B, D (B, D) | Beta-2-microglobulin | polymer | 100 | 11879.4 | 2 | UniProt (P61769) Pfam (PF07654) | Homo sapiens (human) | |
| 3 | E, F (E, F) | Nucleoprotein | polymer | 9 | 1295.5 | 2 | UniProt (P0DTC9) | Severe acute respiratory syndrome coronavirus 2 | N,Nucleocapsid protein,NC,Protein N |
| 4 | G (A) | HEXAETHYLENE GLYCOL | non-polymer | 282.3 | 1 | Chemie (P6G) | |||
| 5 | H, J (A, C) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
| 6 | I (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 7 | K, L, M, N, O... (A, B, C, D, E...) | water | water | 18.0 | 390 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 275 (UniProt: P01889)
B, D: 1 - 99 (UniProt: P61769)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 90536.1 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 586.7 | |
| All* | Total formula weight | 91122.7 |
