9IYI
VLP structure of Chikungunya virus complexed with C34 Fab, 2f block.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, O, Q, S (S, Q, O, M) | C34 Fab, Heavy Chain | polymer | 264 | 28360.7 | 4 | Homo sapiens | ||
| 2 | B, P, R, T (T, R, P, N) | C34 Fab, Light Chain | polymer | 241 | 26472.5 | 4 | Homo sapiens | ||
| 3 | C, D, E, F (A, B, C, D) | CHIKV E1 | polymer | 439 | 47446.9 | 4 | UniProt (A0A286S4J4) Pfam (PF01589) | Chikungunya virus | p130 |
| 4 | G, H, I, J (E, F, G, H) | Structural polyprotein | polymer | 419 | 46909.6 | 4 | UniProt (D7R9A2) Pfam (PF00943) | Chikungunya virus | p130 |
| 5 | K, L, M, N (I, J, K, L) | CHIKV capsid protein | polymer | 151 | 16428.6 | 4 | UniProt (A0A6B9KBE1) Pfam (PF00944) | Chikungunya virus | Togavirin |
| 6 | U (U) | alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB | |||
| 7 | V (V) | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G47477HI) | |||
| 8 | W (W) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
| 9 | X (X) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G32152BH) | |||
| 10 | Y (Y) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 11 | AA, BA, CA, Z (D, E, F, C) | CHOLESTEROL | non-polymer | 386.7 | 4 | Chemie (CLR) |
Sequence modifications
A, B, C, D: 1 - 439 (UniProt: A0A286S4J4)
E, F, G, H: 5 - 423 (UniProt: D7R9A2)
| PDB | External Database | Details |
|---|---|---|
| Lys 211 | Glu 1020 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asp 60 | Gly 385 | conflict |
| Thr 211 | Ile 536 | conflict |
| Met 312 | Thr 637 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 662473.3 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 3517.3 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1546.6 | |
| All* | Total formula weight | 667537.1 |
