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9ISZ

Structure of Clr4 catalyzing K14-ubiquitinated histone H3 K9 methylation

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Histone-lysine N-methyltransferase, H3 lysine-9 specificpolymer30134078.12UniProt (O60016)
Pfam (PF05033)
Pfam (PF00856)
Schizosaccharomyces pombe 972h-Cryptic loci regulator 4,Histone H3-K9 methyltransferase,H3-K9-HMTase,HKMT,Lysine N-methyltransferase 1,Protein lysine methyltransferase clr4,PKMT
2C, D
(C, D)
Ubiquitinpolymer768622.92UniProt (P0CG47)
Pfam (PF00240)
UniProt (by SIFTS) (P0CG48)
Homo sapiens (human)
3E, F
(E, F)
Histone H3.1/H3.2polymer171807.12UniProt (P09988)Schizosaccharomyces pombe 972h-
4G, L
(A, B)
S-ADENOSYLMETHIONINEnon-polymer398.42Chemie (SAM)
5H, I, J, K, M...
(A, B)
ZINC IONnon-polymer65.48Chemie (ZN)
6Q, R, S, T, U
(A, B, C, D, F)
waterwater18.053Chemie (HOH)
Sequence modifications
A, B: 191 - 490 (UniProt: O60016)
PDBExternal DatabaseDetails
Gly 190-expression tag
C, D: 1 - 76 (UniProt: P0CG47)
PDBExternal DatabaseDetails
Cys 76Gly 228engineered mutation
E, F: 3 - 19 (UniProt: P09988)
PDBExternal DatabaseDetails
Nle 9Lys 10engineered mutation
Cys 14Lys 15engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight89016.1
Non-Polymers*Number of molecules10
Total formula weight1320.1
All*Total formula weight90336.3
*Water molecules are not included.

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PDB entries from 2025-07-30

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