9IFM
STRUCTURE OF UNSTACKED C2S2-TYPE PSII-LHCII SUPERCOMPLEX FROM PISUM SATIVUM
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, Z (A, a) | Photosystem II protein D1 | polymer | 334 | 36972.1 | 2 | UniProt (P06585) | Pisum sativum (garden pea) | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 2 | AA, B (B, b) | Photosystem II CP47 reaction center protein | polymer | 503 | 55534.1 | 2 | UniProt (D5MAL6) | Pisum sativum (garden pea) | PSII 47 kDa protein,Protein CP-47 |
| 3 | BA, C (C, c) | Photosystem II CP43 reaction center protein | polymer | 450 | 49275.4 | 2 | UniProt (P06004) | Pisum sativum (garden pea) | PSII 43 kDa protein,Photosystem II 44 kDa chlorophyll apoprotein,Protein CP-43 |
| 4 | CA, D (D, d) | Photosystem II D2 protein | polymer | 352 | 39426.0 | 2 | UniProt (P06006) | Pisum sativum (garden pea) | PSII D2 protein,Photosystem Q(A) protein |
| 5 | DA, E (E, e) | Cytochrome b559 subunit alpha | polymer | 75 | 8624.7 | 2 | UniProt (P13554) | Pisum sativum (garden pea) | PSII reaction center subunit V |
| 6 | EA, F (F, f) | Cytochrome b559 subunit beta | polymer | 30 | 3396.0 | 2 | UniProt (P62096) | Pisum sativum (garden pea) | PSII reaction center subunit VI |
| 7 | FA, G, MA, N (G, N, g, n) | Chlorophyll a-b binding protein 8, chloroplastic | polymer | 216 | 23320.2 | 4 | UniProt (P27490) | Pisum sativum (garden pea) | LHCII type I CAB-8 |
| 8 | GA, H (H, h) | Photosystem II reaction center protein H | polymer | 60 | 6455.6 | 2 | UniProt (Q9XQR3) | Pisum sativum (garden pea) | PSII-H,Photosystem II 10 kDa phosphoprotein,Photosystem II 9 kDa phosphoprotein |
| 9 | HA, I (I, i) | Photosystem II reaction center protein I | polymer | 34 | 3926.7 | 2 | UniProt (D5MAJ9) | Pisum sativum (garden pea) | PSII-I,PSII 4.8 kDa protein |
| 10 | IA, J (J, j) | Photosystem II reaction center protein J | polymer | 35 | 3598.3 | 2 | UniProt (P13555) | Pisum sativum (garden pea) | PSII-J |
| 11 | JA, K (K, k) | Photosystem II reaction center protein K | polymer | 37 | 4287.2 | 2 | UniProt (D5MAJ8) | Pisum sativum (garden pea) | PSII-K |
| 12 | KA, L (L, l) | Photosystem II reaction center protein L | polymer | 36 | 4265.8 | 2 | UniProt (P60147) | Pisum sativum (garden pea) | PSII-L |
| 13 | LA, M (M, m) | Photosystem II reaction center protein M | polymer | 33 | 3641.4 | 2 | UniProt (P69529) | Pisum sativum (garden pea) | PSII-M |
| 14 | NA, O (O, o) | Oxygen-evolving enhancer protein 1, chloroplastic | polymer | 248 | 26554.6 | 2 | UniProt (P14226) | Pisum sativum (garden pea) | OEE1,33 kDa subunit of oxygen evolving system of photosystem II,33 kDa thylakoid membrane protein,OEC 33 kDa subunit |
| 15 | OA, P (P, p) | Oxygen-evolving enhancer protein 2, chloroplastic | polymer | 186 | 20287.5 | 2 | UniProt (P16059) | Pisum sativum (garden pea) | OEE2,23 kDa subunit of oxygen evolving system of photosystem II,23 kDa thylakoid membrane protein,OEC 23 kDa subunit |
| 16 | PA, Q (Q, q) | Oxygen-evolving enhancer protein 3 | polymer | 148 | 16398.9 | 2 | UniProt (Q7Y1T5) | Pisum sativum (garden pea) | |
| 17 | QA, R (R, r) | Chlorophyll a-b binding protein, chloroplastic | polymer | 224 | 24791.1 | 2 | UniProt (A0A2D0TCJ0) | Pisum sativum (garden pea) | |
| 18 | RA, S (S, s) | Chlorophyll a-b binding protein, chloroplastic | polymer | 218 | 23839.1 | 2 | UniProt (A0A9D5GXR9) | Pisum sativum (garden pea) | |
| 19 | SA, T (T, t) | Photosystem II reaction center protein T | polymer | 31 | 3563.3 | 2 | UniProt (Q8HS25) | Pisum sativum (garden pea) | PSII-T |
| 20 | TA, U (W, w) | Photosystem II reaction center protein W | polymer | 54 | 5914.6 | 2 | UniProt (A0A2D0TCJ2) | Pisum sativum (garden pea) | Photosystem II reaction center protein W,PSBW |
| 21 | UA, V (X, x) | Ultraviolet-B-repressible protein | polymer | 39 | 3929.6 | 2 | UniProt (Q8VYY1) | Pisum sativum (garden pea) | |
| 22 | VA, W (Y, y) | Chlorophyll a-b binding protein AB80, chloroplastic | polymer | 219 | 23557.5 | 2 | UniProt (P07371) | Pisum sativum (garden pea) | LHCII type I CAB-AB80,LHCP |
| 23 | WA, X (Z, z) | Photosystem II reaction center protein Z | polymer | 61 | 6468.7 | 2 | UniProt (Q32902) | Pisum sativum (garden pea) | PSII-Z |
| 24 | XA, Y (U, u) | Photosystem II 5 kDa protein, chloroplastic | polymer | 28 | 3080.6 | 2 | UniProt (A0A9D4VSA9) | Pisum sativum (garden pea) | |
| 25 | NH, YA (a, A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 26 | OH, ZA (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
| 27 | AB, BB, PH, QH (A, a) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
| 28 | AC, AD, AJ, BC, BD... (B, C, c, N, b...) | CHLOROPHYLL A | non-polymer | 893.5 | 156 | Chemie (CLA) | |||
| 29 | EB, MD, TH, WJ (A, D, a, d) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 30 | AK, AL, CD, DD, DN... (d, k, C, t, B...) | BETA-CAROTENE | non-polymer | 536.9 | 22 | Chemie (BCR) | |||
| 31 | HB, IC, LB, OE, QE... (A, B, L, M, a) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) | |||
| 32 | BL, DK, EN, IB, ID... (k, d, w, A, C...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
| 33 | BK, JB, QD, XH (d, A, D, a) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 34 | MB, XJ (A, d) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
| 35 | AG, AI, CK, CL, CN... (S, a, d, l, s...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 28 | Chemie (LHG) | |||
| 36 | FD, GD, HD, MH, OB... (C, a, A, B, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) | |||
| 37 | EK, TD (f, E) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 38 | AE, AF, AH, AM, BE... (G, N, Y, r, S...) | CHLOROPHYLL B | non-polymer | 907.5 | 50 | Chemie (CHL) | |||
| 39 | AN, GF, HF, HH, IE... (s, N, Y, G, r...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 18 | Chemie (LUT) | |||
| 40 | BN, GN, IF, KE, KH... (s, y, N, G, Y...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 9 | Chemie (NEX) | |||
| 41 | JH, JM, WN, YF (Y, r, y, R) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 4 | Chemie (XAT) | |||
| 42 | AO, AP, BO, BP, CO... (B, c, C, d, D...) | water | water | 18.0 | 1711 | Chemie (HOH) |
Sequence modifications
F, f: 10 - 39 (UniProt: P62096)
| PDB | External Database | Details |
|---|---|---|
| Phe 26 | Ser 26 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 50 |
| Total formula weight | 848858.5 | |
| Non-Polymers* | Number of molecules | 339 |
| Total formula weight | 270507.1 | |
| All* | Total formula weight | 1119365.6 |
