9I89
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Large ribosomal subunit protein bL28 | polymer | 62 | 6995.3 | 1 | UniProt (Q2FHL4) | Staphylococcus aureus | 50S ribosomal protein L28 |
| 2 | B (2) | Large ribosomal subunit protein uL29 | polymer | 69 | 8105.3 | 1 | UniProt (A8Z349) | Staphylococcus aureus | 50S ribosomal protein L29 |
| 3 | C (3) | Large ribosomal subunit protein uL30 | polymer | 59 | 6565.7 | 1 | UniProt (Q2FEQ7) | Staphylococcus aureus | 50S ribosomal protein L30 |
| 4 | D (5) | Large ribosomal subunit protein bL32 | polymer | 57 | 6500.6 | 1 | UniProt (Q2FHV3) | Staphylococcus aureus | 50S ribosomal protein L32 |
| 5 | E (6) | Large ribosomal subunit protein bL33A | polymer | 49 | 5944.9 | 1 | UniProt (Q2FYU6) Pfam (PF00471) | Staphylococcus aureus | 50S ribosomal protein L33 1 |
| 6 | F (7) | Large ribosomal subunit protein bL34 | polymer | 45 | 5454.6 | 1 | UniProt (Q2FDE6) | Staphylococcus aureus | 50S ribosomal protein L34 |
| 7 | G (8) | Large ribosomal subunit protein bL35 | polymer | 66 | 7722.4 | 1 | UniProt (Q2FG57) | Staphylococcus aureus | 50S ribosomal protein L35 |
| 8 | H (9) | Large ribosomal subunit protein bL36 | polymer | 37 | 4318.4 | 1 | UniProt (Q2FER2) | Staphylococcus aureus | 50S ribosomal protein L36 |
| 9 | I (B) | 5S ribosomal RNA | polymer | 115 | 36974.9 | 1 | GenBank (CP020619.1) | Staphylococcus aureus | |
| 10 | J (C) | Large ribosomal subunit protein uL24 | polymer | 105 | 11561.5 | 1 | UniProt (Q2FEQ0) | Staphylococcus aureus | 50S ribosomal protein L24 |
| 11 | K (D) | fMet-P-tRNA | polymer | 77 | 24788.8 | 1 | Staphylococcus aureus | ||
| 12 | L (G) | Large ribosomal subunit protein uL2 | polymer | 277 | 30217.2 | 1 | UniProt (Q2FEP2) | Staphylococcus aureus | 50S ribosomal protein L2 |
| 13 | M (H) | Large ribosomal subunit protein uL3 | polymer | 220 | 23760.3 | 1 | UniProt (Q2FEN9) | Staphylococcus aureus | 50S ribosomal protein L3 |
| 14 | N (I) | Large ribosomal subunit protein uL4 | polymer | 207 | 22495.7 | 1 | UniProt (Q2FEP0) | Staphylococcus aureus | 50S ribosomal protein L4 |
| 15 | O (J) | Large ribosomal subunit protein uL5 | polymer | 179 | 20296.6 | 1 | UniProt (Q2FEQ1) | Staphylococcus aureus | 50S ribosomal protein L5 |
| 16 | P (K) | Large ribosomal subunit protein uL6 | polymer | 178 | 19818.6 | 1 | UniProt (Q2FEQ4) | Staphylococcus aureus | 50S ribosomal protein L6 |
| 17 | Q (M) | Large ribosomal subunit protein uL13 | polymer | 145 | 16359.4 | 1 | UniProt (Q2FES1) | Staphylococcus aureus | 50S ribosomal protein L13 |
| 18 | R (N) | Large ribosomal subunit protein uL14 | polymer | 122 | 13157.3 | 1 | UniProt (Q2FEP9) | Staphylococcus aureus | 50S ribosomal protein L14 |
| 19 | S (O) | Large ribosomal subunit protein uL15 | polymer | 146 | 15628.9 | 1 | UniProt (Q2FEQ8) | Staphylococcus aureus | 50S ribosomal protein L15 |
| 20 | T (P) | Large ribosomal subunit protein uL16 | polymer | 144 | 16274.0 | 1 | UniProt (Q2FEP6) | Staphylococcus aureus | 50S ribosomal protein L16 |
| 21 | U (Q) | Large ribosomal subunit protein bL17 | polymer | 122 | 13771.8 | 1 | UniProt (Q2FER6) | Staphylococcus aureus | 50S ribosomal protein L17 |
| 22 | V (R) | Large ribosomal subunit protein uL18 | polymer | 119 | 13124.1 | 1 | UniProt (Q2FEQ5) | Staphylococcus aureus | 50S ribosomal protein L18 |
| 23 | W (S) | Large ribosomal subunit protein bL19 | polymer | 116 | 13392.8 | 1 | UniProt (Q2FHJ7) | Staphylococcus aureus | 50S ribosomal protein L19 |
| 24 | X (T) | Large ribosomal subunit protein bL20 | polymer | 118 | 13720.3 | 1 | UniProt (Q2FG58) | Staphylococcus aureus | 50S ribosomal protein L20 |
| 25 | Y (U) | Large ribosomal subunit protein bL21 | polymer | 102 | 11354.1 | 1 | UniProt (Q2FG80) | Staphylococcus aureus | 50S ribosomal protein L21 |
| 26 | Z (V) | Large ribosomal subunit protein uL22 | polymer | 117 | 12857.9 | 1 | UniProt (Q2FEP4) | Staphylococcus aureus | 50S ribosomal protein L22 |
| 27 | AA (W) | Large ribosomal subunit protein uL23 | polymer | 91 | 10625.4 | 1 | UniProt (Q2FEP1) | Staphylococcus aureus | 50S ribosomal protein L23 |
| 28 | BA (Y) | Large ribosomal subunit protein bL25 | polymer | 217 | 23810.6 | 1 | UniProt (Q2FJE0) | Staphylococcus aureus | 50S ribosomal protein L25,General stress protein CTC |
| 29 | CA (Z) | Large ribosomal subunit protein bL27 | polymer | 94 | 10334.8 | 1 | UniProt (Q2FG82) | Staphylococcus aureus | 50S ribosomal protein L27 |
| 30 | DA (c) | Small ribosomal subunit protein uS2 | polymer | 255 | 29136.4 | 1 | UniProt (Q2FHI2) | Staphylococcus aureus | 30S ribosomal protein S2 |
| 31 | EA (d) | Small ribosomal subunit protein uS3 | polymer | 217 | 24143.9 | 1 | UniProt (Q2FEP5) | Staphylococcus aureus | 30S ribosomal protein S3 |
| 32 | FA (e) | Small ribosomal subunit protein uS4 | polymer | 200 | 23051.4 | 1 | UniProt (Q2FG18) | Staphylococcus aureus | 30S ribosomal protein S4 |
| 33 | GA (f) | Small ribosomal subunit protein uS5 | polymer | 166 | 17770.5 | 1 | UniProt (Q2FEQ6) | Staphylococcus aureus | 30S ribosomal protein S5 |
| 34 | HA (g) | Small ribosomal subunit protein bS6 | polymer | 98 | 11613.1 | 1 | UniProt (Q2FJP8) | Staphylococcus aureus | 30S ribosomal protein S6 |
| 35 | IA (i) | Small ribosomal subunit protein uS8 | polymer | 132 | 14854.3 | 1 | UniProt (Q2FEQ3) | Staphylococcus aureus | 30S ribosomal protein S8 |
| 36 | JA (j) | Small ribosomal subunit protein uS9 | polymer | 130 | 14642.7 | 1 | UniProt (A6QJ59) | Staphylococcus aureus | 30S ribosomal protein S9 |
| 37 | KA (k) | Small ribosomal subunit protein uS10 | polymer | 102 | 11598.5 | 1 | UniProt (Q2FEN8) | Staphylococcus aureus | 30S ribosomal protein S10 |
| 38 | LA (l) | Small ribosomal subunit protein uS11 | polymer | 129 | 13908.0 | 1 | UniProt (Q2FER4) | Staphylococcus aureus | 30S ribosomal protein S11 |
| 39 | MA (m) | Small ribosomal subunit protein uS12 | polymer | 137 | 15320.9 | 1 | UniProt (Q2FJ95) | Staphylococcus aureus | 30S ribosomal protein S12 |
| 40 | NA (n) | Small ribosomal subunit protein uS13 | polymer | 121 | 13747.9 | 1 | UniProt (Q2FER3) | Staphylococcus aureus | 30S ribosomal protein S13 |
| 41 | OA (o) | Small ribosomal subunit protein uS14B | polymer | 61 | 7317.8 | 1 | UniProt (Q2FEQ2) | Staphylococcus aureus | 30S ribosomal protein S14 type Z |
| 42 | PA (p) | Small ribosomal subunit protein uS15 | polymer | 89 | 10634.3 | 1 | UniProt (Q2FHG5) | Staphylococcus aureus | 30S ribosomal protein S15 |
| 43 | QA (q) | Small ribosomal subunit protein bS16 | polymer | 91 | 10253.9 | 1 | UniProt (Q2FHK0) | Staphylococcus aureus | 30S ribosomal protein S16 |
| 44 | RA (r) | Small ribosomal subunit protein uS17 | polymer | 87 | 10196.9 | 1 | UniProt (Q2FEP8) | Staphylococcus aureus | 30S ribosomal protein S17 |
| 45 | SA (s) | Small ribosomal subunit protein bS18 | polymer | 80 | 9332.0 | 1 | UniProt (Q2FJP6) | Staphylococcus aureus | 30S ribosomal protein S18 |
| 46 | TA (t) | Small ribosomal subunit protein uS19 | polymer | 92 | 10639.3 | 1 | UniProt (Q2FEP3) | Staphylococcus aureus | 30S ribosomal protein S19 |
| 47 | UA (u) | Small ribosomal subunit protein bS20 | polymer | 83 | 9039.5 | 1 | UniProt (Q2FGD8) | Staphylococcus aureus | 30S ribosomal protein S20 |
| 48 | VA (A) | 23S ribosomal RNA | polymer | 2923 | 946725.6 | 1 | GenBank (CP020619.1) | Staphylococcus aureus | |
| 49 | WA (a) | 16S ribosomal RNA | polymer | 1552 | 502058.3 | 1 | GenBank (CP020619.1) | Staphylococcus aureus | |
| 50 | XA (h) | Small ribosomal subunit protein uS7 | polymer | 156 | 17826.6 | 1 | UniProt (Q2FJ94) | Staphylococcus aureus | 30S ribosomal protein S7 |
| 51 | YA (4) | Large ribosomal subunit protein bL31B | polymer | 84 | 9737.9 | 1 | UniProt (Q2FF08) | Staphylococcus aureus | 50S ribosomal protein L31 type B |
| 52 | AB, CB, PB, ZA (6, 9, o, 5) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) PubChem (32051) | |||
| 53 | AC, AD, AE, AF, AG... (A, a, 7, B, D...) | MAGNESIUM ION | non-polymer | 24.3 | 421 | Chemie (MG) PubChem (888) | |||
| 54 | LB (D) | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) PubChem (439750) | |||
| 55 | CC, LC, SB, SC, SN (A, a) | POTASSIUM ION | non-polymer | 39.1 | 5 | Chemie (K) PubChem (813) | |||
| 56 | SF (A) | Clincelin | non-polymer | 575.1 | 1 | Chemie (A1I09) PubChem (153312658) |
Sequence modifications
A: 1 - 2923 (GenBank: CP020619.1)
| PDB | External Database | Details |
|---|---|---|
| U 261 | C 559541 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 2159481.9 | |
| Non-Polymers* | Number of molecules | 432 |
| Total formula weight | 11441.9 | |
| All* | Total formula weight | 2170923.8 |
