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9I5T

50S subunit of P. gingivalis ribosome with Lefamulin

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(0)
Large ribosomal subunit protein bL28polymer799027.81UniProt (B2RM15)
Pfam (PF00830)
Porphyromonas gingivalis50S ribosomal protein L28
2B
(1)
Large ribosomal subunit protein uL29polymer647499.81UniProt (B2RLY4)
Pfam (PF00831)
Porphyromonas gingivalis50S ribosomal protein L29
3C
(11)
Large ribosomal subunit protein uL5polymer18620912.61UniProt (B2RLY0)
Pfam (PF00281)
Pfam (PF00673)
Porphyromonas gingivalis50S ribosomal protein L5
4D
(12)
Large ribosomal subunit protein bL31Bpolymer859816.31UniProt (B2RIG0)
Pfam (PF01197)
Porphyromonas gingivalis50S ribosomal protein L31 type B
5E
(2)
Large ribosomal subunit protein uL30polymer586700.11UniProt (B2RLX4)
Pfam (PF00327)
Porphyromonas gingivalis50S ribosomal protein L30
6F
(4)
Large ribosomal subunit protein bL32polymer616958.21UniProt (B2RH62)
Pfam (PF01783)
Porphyromonas gingivalis50S ribosomal protein L32
7G
(6)
Large ribosomal subunit protein bL34polymer505761.71UniProt (B2RIL8)
Pfam (PF00468)
Porphyromonas gingivalis50S ribosomal protein L34
8H
(7)
Large ribosomal subunit protein bL35polymer657518.11UniProt (B2RJD8)
Pfam (PF01632)
Porphyromonas gingivalis50S ribosomal protein L35
9I
(8)
Large ribosomal subunit protein bL36polymer384601.61UniProt (B2RLW9)
Pfam (PF00444)
Porphyromonas gingivalis50S ribosomal protein L36
10J
(A)
23S rRNApolymer2882934217.71Porphyromonas gingivalis
11K
(B)
5S rRNApolymer10935186.91Porphyromonas gingivalis
12L
(D)
Large ribosomal subunit protein uL2polymer27429778.61UniProt (B2RLY9)
Pfam (PF00181)
Pfam (PF03947)
Porphyromonas gingivalis50S ribosomal protein L2
13M
(E)
Large ribosomal subunit protein uL3polymer20521925.51UniProt (B2RLZ2)
Pfam (PF00297)
Porphyromonas gingivalis50S ribosomal protein L3
14N
(F)
Large ribosomal subunit protein uL4polymer20923247.91UniProt (Q7MTL4)
Pfam (PF00573)
Porphyromonas gingivalis50S ribosomal protein L4
15O
(M)
Large ribosomal subunit protein uL13polymer15117075.81UniProt (Q7MX43)
Pfam (PF00572)
Porphyromonas gingivalis
16P
(O)
Large ribosomal subunit protein uL15polymer14815616.11UniProt (Q7MTN2)
Pfam (PF00828)
Porphyromonas gingivalis50S ribosomal protein L15
17Q
(P)
Large ribosomal subunit protein uL16polymer14416344.11UniProt (B2RLY5)
Pfam (PF00252)
Porphyromonas gingivalis50S ribosomal protein L16
18R
(Q)
Large ribosomal subunit protein bL17polymer16018074.11UniProt (B2RLW4)
Pfam (PF01196)
Porphyromonas gingivalis50S ribosomal protein L17
19S
(R)
Large ribosomal subunit protein uL18polymer11412560.61UniProt (Q7MTM9)
Pfam (PF00861)
Porphyromonas gingivalis50S ribosomal protein L18
20T
(S)
Large ribosomal subunit protein bL19polymer12114120.51UniProt (B2RGQ9)
Pfam (PF01245)
Porphyromonas gingivalis50S ribosomal protein L19
21U
(T)
Large ribosomal subunit protein bL20polymer11513324.71UniProt (Q7MVQ8)
Pfam (PF00453)
Porphyromonas gingivalis50S ribosomal protein L20
22V
(U)
Large ribosomal subunit protein bL21polymer10511843.91UniProt (Q7MX95)
Pfam (PF00829)
Porphyromonas gingivalis50S ribosomal protein L21
23W
(V)
Large ribosomal subunit protein uL22polymer13415357.81UniProt (B2RLY7)
Pfam (PF00237)
Porphyromonas gingivalis50S ribosomal protein L22
24X
(W)
Large ribosomal subunit protein uL23polymer9711116.11UniProt (A0A134DR82)
Pfam (PF00276)
Porphyromonas gingivalis
25Y
(X)
Large ribosomal subunit protein uL24polymer10611627.71UniProt (B2RLY1)
Pfam (PF00467)
Pfam (PF17136)
Porphyromonas gingivalis50S ribosomal protein L24
26Z
(Y)
Large ribosomal subunit protein bL25polymer19221028.61UniProt (B2RHF3)
Pfam (PF01386)
Pfam (PF14693)
Porphyromonas gingivalis50S ribosomal protein L25,General stress protein CTC
27AA
(Z)
Large ribosomal subunit protein bL27polymer859244.61UniProt (B2RLC1)
Pfam (PF01016)
Porphyromonas gingivalis50S ribosomal protein L27
28BA
(h)
Large ribosomal subunit protein bL9polymer17919356.21UniProt (B2RIG5)
Pfam (PF01281)
Pfam (PF03948)
Porphyromonas gingivalis50S ribosomal protein L9
29CA
(15)
DUF4295 domain-containing proteinpolymer495559.51UniProt (A0AAE9XCN0)Porphyromonas gingivalis
30DA
(13)
Large ribosomal subunit protein uL6polymer18320389.81UniProt (B2RLX7)
Pfam (PF00347)
Porphyromonas gingivalis50S ribosomal protein L6
31EA
(N)
Large ribosomal subunit protein uL14polymer12113086.31UniProt (B2RLY2)
Pfam (PF00238)
Porphyromonas gingivalis50S ribosomal protein L14
32FA
(5)
Large ribosomal subunit protein bL33polymer627356.81UniProt (B2RM14)
Pfam (PF00471)
Porphyromonas gingivalis50S ribosomal protein L33
33AB, AC, AD, AE, AF...
(A, 4, B, F, V)
MAGNESIUM IONnon-polymer24.3139Chemie (MG)
34HA
(4)
ZINC IONnon-polymer65.41Chemie (ZN)
35IA
(A)
Lefamulinnon-polymer507.71Chemie (62B)
36AG, BG, CG, DG, EG...
(A)
POTASSIUM IONnon-polymer39.118Chemie (K)
37FG, GG, HG, IG, JG...
(A, B)
SODIUM IONnon-polymer23.015Chemie (NA)
38AH, BH, CH, DH, EH...
(6, 7, A, B, D...)
waterwater18.01380Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains32
Total formula weight1376236.0
Non-Polymers*Number of molecules174
Total formula weight5000.1
All*Total formula weight1381236.1
*Water molecules are not included.

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PDB entries from 2025-08-27

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