9I1W
High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 26S rRNA | polymer | 3337 | 1079529.3 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 2 | B (3) | 5S RNA | polymer | 120 | 38612.9 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 3 | C (4) | 5.8S RNA | polymer | 156 | 50161.7 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 4 | D (9) | E-site tRNA (5'-R(P*CP*CP*A)-3') | polymer | 3 | 894.6 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 5 | E (LA) | 60S ribosomal protein L2-like protein | polymer | 254 | 27598.9 | 1 | UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) | Thermochaetoides thermophila DSM 1495 | |
| 6 | F (LB) | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) | Thermochaetoides thermophila DSM 1495 | |
| 7 | G (LC) | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) | Thermochaetoides thermophila DSM 1495 | |
| 8 | H (LD) | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) | Thermochaetoides thermophila DSM 1495 | |
| 9 | I (LE) | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) | Thermochaetoides thermophila DSM 1495 | |
| 10 | J (LF) | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 1 | UniProt (G0SFL0) Pfam (PF00327) Pfam (PF08079) | Thermochaetoides thermophila DSM 1495 | |
| 11 | K (LG) | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 12 | L (LH) | 60S ribosomal protein l9-like protein | polymer | 192 | 21582.1 | 1 | UniProt (G0S0E5) Pfam (PF00347) | Thermochaetoides thermophila DSM 1495 | |
| 13 | M (LI) | 60S ribosomal protein L10-like protein | polymer | 219 | 25255.4 | 1 | UniProt (G0SEI1) Pfam (PF00252) | Thermochaetoides thermophila DSM 1495 | |
| 14 | N (LJ) | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) | Thermochaetoides thermophila DSM 1495 | |
| 15 | O (LK) | 60S ribosomal protein L12-like protein | polymer | 165 | 17802.7 | 1 | UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) | Thermochaetoides thermophila DSM 1495 | |
| 16 | P (LL) | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) | Thermochaetoides thermophila DSM 1495 | |
| 17 | Q (LM) | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) | Thermochaetoides thermophila DSM 1495 | |
| 18 | R (LN) | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) | Thermochaetoides thermophila DSM 1495 | |
| 19 | S (LO) | 60S ribosomal protein L16-like protein | polymer | 204 | 22888.0 | 1 | UniProt (G0SH61) Pfam (PF00572) | Thermochaetoides thermophila DSM 1495 | |
| 20 | T (LP) | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) | Thermochaetoides thermophila DSM 1495 | |
| 21 | U (LQ) | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) | Thermochaetoides thermophila DSM 1495 | |
| 22 | V (LR) | Ribosomal protein L19 | polymer | 192 | 22409.2 | 1 | UniProt (G0S9T3) Pfam (PF01280) | Thermochaetoides thermophila DSM 1495 | |
| 23 | W (LS) | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) | Thermochaetoides thermophila DSM 1495 | |
| 24 | X (LT) | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) | Thermochaetoides thermophila DSM 1495 | |
| 25 | Y (LU) | 60S ribosomal protein L22-like protein | polymer | 127 | 14302.6 | 1 | UniProt (G0SDS8) Pfam (PF01776) | Thermochaetoides thermophila DSM 1495 | |
| 26 | Z (LV) | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) | Thermochaetoides thermophila DSM 1495 | |
| 27 | AA (LW) | 60S ribosomal protein L24-like protein | polymer | 161 | 18081.1 | 1 | UniProt (G0S1P9) Pfam (PF01246) | Thermochaetoides thermophila DSM 1495 | |
| 28 | BA (LX) | 60S ribosomal protein L25-like protein | polymer | 156 | 17175.3 | 1 | UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) | Thermochaetoides thermophila DSM 1495 | |
| 29 | CA (LY) | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) | Thermochaetoides thermophila DSM 1495 | |
| 30 | DA (LZ) | 60S ribosomal protein L27 | polymer | 135 | 15803.7 | 1 | UniProt (G0RZE9) Pfam (PF01777) | Thermochaetoides thermophila DSM 1495 | |
| 31 | EA (La) | 60S ribosomal protein L28-like protein | polymer | 149 | 16848.5 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 32 | FA (Lb) | 60S ribosomal protein L29 | polymer | 130 | 15041.3 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 33 | GA (Lc) | 60S ribosomal protein l30-like protein | polymer | 108 | 11602.6 | 1 | UniProt (G0SEI0) Pfam (PF01248) | Thermochaetoides thermophila DSM 1495 | |
| 34 | HA (Ld) | Putative 60S ribosomal protein | polymer | 120 | 13872.2 | 1 | UniProt (G0SD68) Pfam (PF01198) | Thermochaetoides thermophila DSM 1495 | |
| 35 | IA (Le) | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) | Thermochaetoides thermophila DSM 1495 | |
| 36 | JA (Lf) | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) | Thermochaetoides thermophila DSM 1495 | |
| 37 | KA (Lg) | Ribosomal protein l34-like protein | polymer | 119 | 13493.0 | 1 | UniProt (G0SFN0) Pfam (PF01199) | Thermochaetoides thermophila DSM 1495 | |
| 38 | LA (Lh) | Dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 126 | 14643.4 | 1 | UniProt (G0S0D7) Pfam (PF00831) | Thermochaetoides thermophila DSM 1495 | |
| 39 | MA (Li) | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) | Thermochaetoides thermophila DSM 1495 | |
| 40 | NA (Lj) | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) | Thermochaetoides thermophila DSM 1495 | |
| 41 | OA (Lk) | 60S ribosomal protein L38-like protein | polymer | 81 | 9537.3 | 1 | UniProt (G0SG89) Pfam (PF01781) | Thermochaetoides thermophila DSM 1495 | |
| 42 | PA (Ll) | Ribosomal protein eL39 | polymer | 102 | 12577.1 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 43 | QA (Lm) | Putative ribosomal protein | polymer | 128 | 14609.2 | 1 | UniProt (G0S8G4) Pfam (PF00240) Pfam (PF01020) | Thermochaetoides thermophila DSM 1495 | |
| 44 | RA, VA (Ln, Lr) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 2 | UniProt (P0CX86) Pfam (PF05162) | Thermochaetoides thermophila DSM 1495 | Ribosomal protein eL41 |
| 45 | SA (Lo) | 60S ribosomal protein L44-like protein | polymer | 106 | 12045.5 | 1 | UniProt (G0SBZ6) Pfam (PF00935) | Thermochaetoides thermophila DSM 1495 | |
| 46 | TA (Lp) | 60S ribosomal protein L43-like protein | polymer | 92 | 10159.0 | 1 | UniProt (G0S6B0) Pfam (PF01780) | Thermochaetoides thermophila DSM 1495 | |
| 47 | UA (Lq) | Putative 60S ribosomal protein | polymer | 147 | 15960.5 | 1 | UniProt (G0SHJ6) Pfam (PF01778) | Thermochaetoides thermophila DSM 1495 | |
| 48 | WA (Ls) | 60S acidic ribosomal protein P0 | polymer | 312 | 33853.6 | 1 | UniProt (G0SGP3) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Thermochaetoides thermophila DSM 1495 | |
| 49 | XA (PC) | Nascent chain C-terminus | polymer | 2 | 188.2 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 50 | YA (PN) | Nascent chain N-terminus | polymer | 6 | 528.6 | 1 | Thermochaetoides thermophila DSM 1495 | ||
| 51 | AB, ZA (1) | SPERMIDINE | non-polymer | 145.2 | 2 | Chemie (SPD) | |||
| 52 | BB, CB (1) | SPERMINE | non-polymer | 202.3 | 2 | Chemie (SPM) | |||
| 53 | AC, AD, AE, AF, AG... (1, LE, LI, LP, 3...) | MAGNESIUM ION | non-polymer | 24.3 | 239 | Chemie (MG) | |||
| 54 | AK, AL, AM, AN, AO... (1, LI, LN, 3, Lb...) | POTASSIUM ION | non-polymer | 39.1 | 188 | Chemie (K) | |||
| 55 | LR, MR, PR, QR, SR (Lg, Lj, Lm, Lo, Lp) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 56 | AS, AT, BS, BT, CS... (LD, Lh, LE, Li, LF...) | water | water | 18.0 | 2256 | Chemie (HOH) |
Sequence modifications
LH: 1 - 192 (UniProt: G0S0E5)
LO: 2 - 204 (UniProt: G0SH61)
LW: 1 - 161 (UniProt: G0S1P9)
Lk: 1 - 81 (UniProt: G0SG89)
Lm: 1 - 128 (UniProt: G0S8G4)
| PDB | External Database | Details |
|---|---|---|
| - | Gly 16 | deletion |
| - | Thr 17 | deletion |
| - | Phe 18 | deletion |
| - | Arg 19 | deletion |
| - | Lys 20 | deletion |
| - | Phe 21 | deletion |
| - | Arg 22 | deletion |
| - | Arg 23 | deletion |
| - | Asn 24 | deletion |
| - | Asp 25 | deletion |
| - | Tyr 26 | deletion |
| - | Thr 27 | deletion |
| - | Phe 28 | deletion |
| - | Gly 29 | deletion |
| - | Arg 30 | deletion |
| - | Thr 31 | deletion |
| - | Arg 32 | deletion |
| - | Gly 33 | deletion |
| - | Arg 34 | deletion |
| - | Glu 35 | deletion |
| - | Lys 36 | deletion |
| - | Lys 37 | deletion |
| - | Arg 38 | deletion |
| - | Gly 39 | deletion |
| - | Thr 40 | deletion |
| - | Thr 41 | deletion |
| - | Ser 42 | deletion |
| - | Ser 43 | deletion |
| - | Lys 44 | deletion |
| - | Ile 45 | deletion |
| - | Gly 46 | deletion |
| - | Glu 47 | deletion |
| - | Leu 48 | deletion |
| - | Asp 49 | deletion |
| - | Ile 50 | deletion |
| - | Asn 51 | deletion |
| - | Gly 52 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Ace 1 | - | acetylation |
| PDB | External Database | Details |
|---|---|---|
| - | Lys 17 | deletion |
| - | Val 18 | deletion |
| - | Arg 19 | deletion |
| - | Phe 20 | deletion |
| - | Pro 21 | deletion |
| - | Ile 22 | deletion |
| - | Ser 23 | deletion |
| - | His 24 | deletion |
| - | Glu 25 | deletion |
| - | Gly 26 | deletion |
| - | Asp 27 | deletion |
| - | Asn 28 | deletion |
| - | Gly 29 | deletion |
| - | Asp 30 | deletion |
| - | Ile 31 | deletion |
| - | Ser 32 | deletion |
| - | His 33 | deletion |
| - | Pro 34 | deletion |
| - | Glu 35 | deletion |
| - | Glu 36 | deletion |
| - | Ile 37 | deletion |
| - | Arg 38 | deletion |
| - | Thr 39 | deletion |
| - | Gly 40 | deletion |
| - | Arg 41 | deletion |
| - | Arg 42 | deletion |
| - | Lys 43 | deletion |
| - | Ile 44 | deletion |
| - | Ala 45 | deletion |
| - | Pro 46 | deletion |
| - | Ala 47 | deletion |
| - | Thr 48 | deletion |
| - | Arg 49 | deletion |
| - | Gln 50 | deletion |
| - | Leu 51 | deletion |
| - | Arg 52 | deletion |
| - | Ala 53 | deletion |
| - | Glu 54 | deletion |
| - | Val 55 | deletion |
| - | Gln 56 | deletion |
| - | Lys 57 | deletion |
| - | Thr 58 | deletion |
| - | Ser 59 | deletion |
| - | Met 60 | deletion |
| PDB | External Database | Details |
|---|---|---|
| - | Lys 23 | deletion |
| - | Ile 24 | deletion |
| - | Leu 25 | deletion |
| - | Thr 26 | deletion |
| - | Ile 27 | deletion |
| - | Ala 28 | deletion |
| - | Phe 29 | deletion |
| - | Pro 30 | deletion |
| - | Pro 31 | deletion |
| - | Pro 32 | deletion |
| - | Leu 33 | deletion |
| - | Thr 34 | deletion |
| - | Ala 35 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Met 1 | Ser 593 | conflict |
| Gln 2 | Arg 594 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 2023005.7 | |
| Non-Polymers* | Number of molecules | 436 |
| Total formula weight | 14181.5 | |
| All* | Total formula weight | 2037187.2 |
