9HYU
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Superoxide dismutase [Fe] | polymer | 370 | 41899.3 | 1 | UniProt (A0A0G4HJZ8) | Chromera velia | SOD1 |
| 2 | B (2) | Superoxide dismutase [Fe] | polymer | 267 | 29931.8 | 1 | UniProt (A0A0G4FB02) | Chromera velia | SOD2 |
| 3 | C (A) | photosystem I | polymer | 395 | 44801.4 | 1 | UniProt (D9IXI2) | Chromera velia | |
| 4 | D (C) | Photosystem I iron-sulfur center | polymer | 80 | 8961.3 | 1 | UniProt (D9IXG0) | Chromera velia | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
| 5 | E (D) | Photosystem I reaction center subunit II | polymer | 269 | 30636.4 | 1 | UniProt (A0A0G4H942) | Chromera velia | |
| 6 | F (E) | Photosystem I reaction center subunit IV | polymer | 133 | 14430.8 | 1 | UniProt (A0A0G4H6U3) | Chromera velia | |
| 7 | G (F) | Photosystem I reaction center subunit III | polymer | 326 | 35865.3 | 1 | UniProt (A0A0G4GX86) | Chromera velia | PSI-F |
| 8 | H (I) | Photosystem I protein (PsaI) | polymer | 211 | 22553.6 | 1 | UniProt (A0A0G4HFQ7) | Chromera velia | |
| 9 | I (L) | Photosystem I reaction center subunit V | polymer | 277 | 29700.7 | 1 | UniProt (A0A0G4GX71) | Chromera velia | PSI subunit V,PsaL,Photosystem I reaction center subunit V |
| 10 | J (M) | Photosystem I protein (PsaM) | polymer | 195 | 22135.1 | 1 | Chromera velia | ||
| 11 | K (R) | Photosystem I protein (PsaR) | polymer | 202 | 22594.4 | 1 | UniProt (A0A0G4FDJ8) | Chromera velia | PsaR |
| 12 | L (b) | Plastid light harvesting protein | polymer | 293 | 32446.8 | 1 | UniProt (A0A0G4ID45) | Chromera velia | PFCb |
| 13 | M (c) | Plastid light harvesting protein | polymer | 237 | 26235.4 | 1 | UniProt (A0A0G4FL36) | Chromera velia | FCPc |
| 14 | N (d) | Plastid light harvesting protein | polymer | 222 | 24313.1 | 1 | UniProt (A0A0G4HNB1) | Chromera velia | |
| 15 | O (e) | Plastid light harvesting protein | polymer | 217 | 24079.0 | 1 | UniProt (A0A0G4HMN0) | Chromera velia | FCPe |
| 16 | P (f) | Chlorophyll a-b binding protein, chloroplastic | polymer | 277 | 31759.3 | 1 | UniProt (A0A0G4I0G6) | Chromera velia | |
| 17 | Q (u) | Photosystem I protein (PsaV) | polymer | 424 | 45973.1 | 1 | UniProt (A0A0G4HRT4) | Chromera velia | PsaV |
| 18 | R (a) | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 280 | 29865.3 | 1 | Chromera velia | ||
| 19 | S (B) | Photosystem I protein (PsaB) | polymer | 1139 | 128908.4 | 1 | UniProt (D9IXI4) | Chromera velia | PsaB |
| 20 | T (G) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 21 | U (H) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 22 | V (2) | FE (III) ION | non-polymer | 55.8 | 1 | Chemie (FE) | |||
| 23 | AA, AI, BA, BI, CH... (A, B, a, b, c...) | CHLOROPHYLL A | non-polymer | 893.5 | 114 | Chemie (CLA) | |||
| 24 | CA (A) | CHLOROPHYLL A ISOMER | non-polymer | 893.5 | 1 | Chemie (CL0) | |||
| 25 | KA, TA, UA (A, C) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 26 | LA, TI (A, B) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) | |||
| 27 | CC, LH, MA, PC, QC... (R, a, A, b, c...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 22 | Chemie (XAT) | |||
| 28 | DB, DD, GB, NA, QB... (F, b, A, L, f...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 11 | Chemie (LMG) | |||
| 29 | BH, CB, GE, OA, UC... (u, F, c, A, b) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 6 | Chemie (DGD) | |||
| 30 | AB, AC, AD, AE, AG... (F, R, b, c, f...) | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 71 | Chemie (LMT) | |||
| 31 | DH, OB, PB, PH, TC... (a, L, B, b, F) | BETA-CAROTENE | non-polymer | 536.9 | 8 | Chemie (BCR) | |||
| 32 | UB (L) | Lauryl Maltose Neopentyl Glycol | non-polymer | 1005.2 | 1 | Chemie (AV0) | |||
| 33 | TF, UG, WI, ZE (e, f, B, d) | [(1~{R},5~{S})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{Z})-3,7,12,16-tetramethyl-17-oxidanyl-19-oxidanylidene-19-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate | non-polymer | 658.9 | 4 | Chemie (A1L6D) | |||
| 34 | AF (d) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 1 | Chemie (SQD) | |||
| 35 | DJ (B) | [(2~{R})-3-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate | non-polymer | 1025.6 | 1 | Chemie (A1I05) | |||
| 36 | HJ, IJ, JJ, KJ, LJ... (1, 2, A, C, D...) | water | water | 18.0 | 1558 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 19 |
| Total formula weight | 647090.6 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1010.9 | |
| Non-Polymers* | Number of molecules | 246 |
| Total formula weight | 178347.2 | |
| All* | Total formula weight | 826448.8 |
