9HYU
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Superoxide dismutase [Fe] | polymer | 370 | 41899.3 | 1 | UniProt (A0A0G4HJZ8) | Chromera velia | SOD1 |
| 2 | B (2) | Superoxide dismutase [Fe] | polymer | 267 | 29931.8 | 1 | UniProt (A0A0G4FB02) | Chromera velia | SOD2 |
| 3 | C (A) | photosystem I | polymer | 395 | 44801.4 | 1 | UniProt (D9IXI2) | Chromera velia | |
| 4 | D (C) | Photosystem I iron-sulfur center | polymer | 80 | 8961.3 | 1 | UniProt (D9IXG0) | Chromera velia | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
| 5 | E (D) | Photosystem I reaction center subunit II | polymer | 269 | 30636.4 | 1 | UniProt (A0A0G4H942) | Chromera velia | |
| 6 | F (E) | Photosystem I reaction center subunit IV | polymer | 133 | 14430.8 | 1 | UniProt (A0A0G4H6U3) | Chromera velia | |
| 7 | G (F) | Photosystem I reaction center subunit III | polymer | 326 | 35865.3 | 1 | UniProt (A0A0G4GX86) | Chromera velia | PSI-F |
| 8 | H (I) | Photosystem I protein (PsaI) | polymer | 211 | 22553.6 | 1 | UniProt (A0A0G4HFQ7) | Chromera velia | |
| 9 | I (L) | Photosystem I reaction center subunit V | polymer | 277 | 29700.7 | 1 | UniProt (A0A0G4GX71) | Chromera velia | PSI subunit V,PsaL,Photosystem I reaction center subunit V |
| 10 | J (M) | Photosystem I protein (PsaM) | polymer | 195 | 22135.1 | 1 | Chromera velia | ||
| 11 | K (R) | Photosystem I protein (PsaR) | polymer | 202 | 22594.4 | 1 | UniProt (A0A0G4FDJ8) | Chromera velia | PsaR |
| 12 | L (b) | Plastid light harvesting protein | polymer | 293 | 32446.8 | 1 | UniProt (A0A0G4ID45) | Chromera velia | PFCb |
| 13 | M (c) | Plastid light harvesting protein | polymer | 237 | 26235.4 | 1 | UniProt (A0A0G4FL36) | Chromera velia | FCPc |
| 14 | N (d) | Plastid light harvesting protein | polymer | 222 | 24313.1 | 1 | UniProt (A0A0G4HNB1) | Chromera velia | |
| 15 | O (e) | Plastid light harvesting protein | polymer | 217 | 24079.0 | 1 | UniProt (A0A0G4HMN0) | Chromera velia | FCPe |
| 16 | P (f) | Chlorophyll a-b binding protein, chloroplastic | polymer | 277 | 31759.3 | 1 | UniProt (A0A0G4I0G6) | Chromera velia | |
| 17 | Q (u) | Photosystem I protein (PsaV) | polymer | 424 | 45973.1 | 1 | UniProt (A0A0G4HRT4) | Chromera velia | PsaV |
| 18 | R (a) | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 280 | 29865.3 | 1 | Chromera velia | ||
| 19 | S (B) | Photosystem I protein (PsaB) | polymer | 1139 | 128908.4 | 1 | UniProt (D9IXI4) | Chromera velia | PsaB |
| 20 | T (G) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 21 | U (H) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 22 | V (2) | FE (III) ION | non-polymer | 55.8 | 1 | Chemie (FE) PubChem (29936) | |||
| 23 | AA, AI, BA, BI, CH... (A, B, a, b, c...) | CHLOROPHYLL A | non-polymer | 893.5 | 114 | Chemie (CLA) | |||
| 24 | CA (A) | CHLOROPHYLL A ISOMER | non-polymer | 893.5 | 1 | Chemie (CL0) | |||
| 25 | KA, TA, UA (A, C) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 26 | LA, TI (A, B) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) PubChem (4812) PubChem (21896458) PubChem (57138572) PubChem (5315258) PubChem (5280483) PubChem (5284607) PubChem (7048754) PubChem (92436622) PubChem (93233163) PubChem (93971968) PubChem (133612476) PubChem (7048753) PubChem (7048755) PubChem (9846607) PubChem (162999945) | |||
| 27 | CC, LH, MA, PC, QC... (R, a, A, b, c...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 22 | Chemie (XAT) PubChem (24970201) PubChem (46936684) PubChem (53477762) PubChem (179930) PubChem (51346155) PubChem (448438) PubChem (92096) PubChem (5282218) PubChem (5315242) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (126456015) PubChem (6384269) PubChem (6442428) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (9851662) PubChem (12358664) PubChem (12358665) PubChem (12358669) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (177696491) PubChem (129888894) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291) | |||
| 28 | DB, DD, GB, NA, QB... (F, b, A, L, f...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 11 | Chemie (LMG) | |||
| 29 | BH, CB, GE, OA, UC... (u, F, c, A, b) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 6 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 30 | AB, AC, AD, AE, AG... (F, R, b, c, f...) | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 71 | Chemie (LMT) | |||
| 31 | DH, OB, PB, PH, TC... (a, L, B, b, F) | BETA-CAROTENE | non-polymer | 536.9 | 8 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 32 | UB (L) | Lauryl Maltose Neopentyl Glycol | non-polymer | 1005.2 | 1 | Chemie (AV0) | |||
| 33 | TF, UG, WI, ZE (e, f, B, d) | [(1~{R},5~{S})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{Z})-3,7,12,16-tetramethyl-17-oxidanyl-19-oxidanylidene-19-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate | non-polymer | 658.9 | 4 | Chemie (A1L6D) | |||
| 34 | AF (d) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 1 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 35 | DJ (B) | [(2~{R})-3-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate | non-polymer | 1025.6 | 1 | Chemie (A1I05) | |||
| 36 | HJ, IJ, JJ, KJ, LJ... (1, 2, A, C, D...) | water | water | 18.0 | 1558 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 19 |
| Total formula weight | 647090.6 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1010.9 | |
| Non-Polymers* | Number of molecules | 246 |
| Total formula weight | 178347.2 | |
| All* | Total formula weight | 826448.8 |
