9HY6
Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (v, A) | pro-tRNA | polymer | 77 | 24846.7 | 2 | GenBank (1847035720) | Escherichia coli | |
| 2 | C (X) | mRNA | polymer | 9 | 2822.7 | 1 | Escherichia coli | ||
| 3 | D (z) | Gelation factor | polymer | 148 | 16122.8 | 1 | UniProt (P13466) | Dictyostelium discoideum | Actin-binding protein 120,ABP-120 |
| 4 | E (0) | Large ribosomal subunit protein bL28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) | Escherichia coli | 50S ribosomal protein L28 |
| 5 | F (1) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) | Escherichia coli | 50S ribosomal protein L29 |
| 6 | G (2) | Large ribosomal subunit protein uL30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) | Escherichia coli | 50S ribosomal protein L30 |
| 7 | H (3) | Large ribosomal subunit protein bL32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) | Escherichia coli | 50S ribosomal protein L32 |
| 8 | I (4) | Large ribosomal subunit protein bL33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) | Escherichia coli | 50S ribosomal protein L33 |
| 9 | J (6) | Large ribosomal subunit protein bL34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) | Escherichia coli | 50S ribosomal protein L34 |
| 10 | K (7) | Large ribosomal subunit protein bL35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) | Escherichia coli | 50S ribosomal protein L35,Ribosomal protein A |
| 11 | L (8) | 50S ribosomal protein L36 | polymer | 50 | 5720.1 | 1 | UniProt (A0A2X1PTA3) | Escherichia coli | |
| 12 | M (a) | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
| 13 | N (b) | 23S rRNA | polymer | 2904 | 941620.4 | 1 | GenBank (2065591978) | Escherichia coli | |
| 14 | O (c) | Large ribosomal subunit protein uL2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) | Escherichia coli | 50S ribosomal protein L2 |
| 15 | P (d) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) | Escherichia coli | ribosomal protein uL3 |
| 16 | Q (e) | Large ribosomal subunit protein uL4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) | Escherichia coli | 50S ribosomal protein L4 |
| 17 | R (f) | Large ribosomal subunit protein uL5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) | Escherichia coli | 50S ribosomal protein L5 |
| 18 | S (g) | Large ribosomal subunit protein uL6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) | Escherichia coli | 50S ribosomal protein L6 |
| 19 | T (h) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) | Escherichia coli | 50S ribosomal protein L9 |
| 20 | U (j) | Large ribosomal subunit protein uL13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) | Escherichia coli | 50S ribosomal protein L13 |
| 21 | V (k) | Large ribosomal subunit protein uL14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) | Escherichia coli | 50S ribosomal protein L14 |
| 22 | W (l) | Large ribosomal subunit protein uL15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) | Escherichia coli | 50S ribosomal protein L15 |
| 23 | X (m) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) | Escherichia coli | ribosomal protein uL16 |
| 24 | Y (n) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) | Escherichia coli | 50S ribosomal protein L17 |
| 25 | Z (o) | Large ribosomal subunit protein uL18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) | Escherichia coli | 50S ribosomal protein L18 |
| 26 | AA (p) | Large ribosomal subunit protein bL19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) | Escherichia coli | 50S ribosomal protein L19 |
| 27 | BA (q) | Large ribosomal subunit protein bL20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) | Escherichia coli | 50S ribosomal protein L20 |
| 28 | CA (r) | Large ribosomal subunit protein bL21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) | Escherichia coli | 50S ribosomal protein L21 |
| 29 | DA (s) | Large ribosomal subunit protein uL22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) | Escherichia coli | 50S ribosomal protein L22 |
| 30 | EA (t) | Large ribosomal subunit protein uL23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) | Escherichia coli | 50S ribosomal protein L23 |
| 31 | FA (u) | Large ribosomal subunit protein uL24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) | Escherichia coli | 50S ribosomal protein L24 |
| 32 | GA (w) | Large ribosomal subunit protein bL25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) | Escherichia coli | 50S ribosomal protein L25 |
| 33 | HA (y) | Large ribosomal subunit protein bL27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) | Escherichia coli | 50S ribosomal protein L27 |
Sequence modifications
z: 10 - 129 (UniProt: P13466)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| His 2 | - | expression tag |
| His 3 | - | expression tag |
| His 4 | - | expression tag |
| His 5 | - | expression tag |
| His 6 | - | expression tag |
| His 7 | - | expression tag |
| Ala 8 | - | expression tag |
| Ser 9 | - | expression tag |
| Glu 130 | - | expression tag |
| Leu 131 | - | expression tag |
| Phe 132 | - | expression tag |
| Ser 133 | - | expression tag |
| Thr 134 | - | expression tag |
| Pro 135 | - | expression tag |
| Val 136 | - | expression tag |
| Trp 137 | - | expression tag |
| Ile 138 | - | expression tag |
| Trp 139 | - | expression tag |
| Trp 140 | - | expression tag |
| Trp 141 | - | expression tag |
| Pro 142 | - | expression tag |
| Arg 143 | - | expression tag |
| Ile 144 | - | expression tag |
| Arg 145 | - | expression tag |
| Gly 146 | - | expression tag |
| Pro 147 | - | expression tag |
| Pro 148 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 34 |
| Total formula weight | 1412652.3 | |
| All* | Total formula weight | 1412652.3 |
