9HQV
Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BA) | Enoyl-CoA hydratase/isomerase family protein | polymer | 716 | 80344.0 | 1 | UniProt (A0A7J6KGS2) Pfam (PF16113) UniProt (by SIFTS) (A0A125YR83) | Toxoplasma gondii | |
| 2 | B (BB) | mS75 | polymer | 25 | 3196.1 | 1 | UniProt (by SIFTS) (S8ERU3) | Toxoplasma gondii | |
| 3 | C (BC) | Pentatricopeptide repeat domain-containing protein | polymer | 686 | 74866.1 | 1 | UniProt (A0A7J6KDF6) UniProt (by SIFTS) (S8F073) | Toxoplasma gondii | |
| 4 | D (BD) | mS92 | polymer | 147 | 17313.2 | 1 | UniProt (A0A7J6KCE0) UniProt (by SIFTS) (A0A125YQQ1) | Toxoplasma gondii | |
| 5 | E (Ba) | Ribosomal protein, uS2m | polymer | 160 | 18266.2 | 1 | UniProt (A0A7J6K4L0) UniProt (by SIFTS) (A0A125YPC1) | Toxoplasma gondii | |
| 6 | F (Bb) | Putative 30S ribosomal protein S5 | polymer | 1140 | 127355.4 | 1 | UniProt (A0A7J6KBH4) Pfam (PF00333) UniProt (by SIFTS) (S8F5G8) | Toxoplasma gondii | |
| 7 | G (Bc) | Putative mitochondrial ribosomal protein s6-2 | polymer | 163 | 19272.8 | 1 | UniProt (A0A7J6K9W0) Pfam (PF01250) UniProt (by SIFTS) (A0A125YRD5) | Toxoplasma gondii | |
| 8 | H (Bd) | Putative ribosomal protein S8 | polymer | 129 | 14858.7 | 1 | UniProt (A0A7J6K132) Pfam (PF00410) UniProt (by SIFTS) (A0A125YNF6) | Toxoplasma gondii | |
| 9 | I (Be) | Putative ribosomal protein S9 | polymer | 530 | 57283.0 | 1 | UniProt (A0A7J6KFS1) Pfam (PF00380) UniProt (by SIFTS) (S8F943) | Toxoplasma gondii | |
| 10 | J (Bf) | uS10m | polymer | 239 | 26919.6 | 1 | UniProt (A0A7J6K2E1) UniProt (by SIFTS) (S8F4G4) | Toxoplasma gondii | |
| 11 | K (Bg) | Putative ribosomal protein S11 | polymer | 393 | 43478.7 | 1 | UniProt (A0A7J6K2Q1) UniProt (by SIFTS) (S8F665) | Toxoplasma gondii | |
| 12 | L (Bh) | Putative 30S ribosomal protein S12 | polymer | 594 | 66403.1 | 1 | UniProt (A0A7J6JTW0) Pfam (PF00164) UniProt (by SIFTS) (S8EUD1) | Toxoplasma gondii | |
| 13 | M (Bi) | us13m | polymer | 110 | 12679.2 | 1 | UniProt (A0A7J6KC71) Pfam (PF23531) UniProt (by SIFTS) (A0A125YYH5) | Toxoplasma gondii | |
| 14 | N (Bj) | Putative ribosomal protein S14 | polymer | 112 | 13063.4 | 1 | UniProt (A0A7J6JW76) UniProt (by SIFTS) (A0A125YWE1) | Toxoplasma gondii | |
| 15 | O (Bk) | Putative 30S ribosomal protein S15 | polymer | 395 | 44807.9 | 1 | UniProt (A0A7J6JZR0) Pfam (PF00312) UniProt (by SIFTS) (A0A125YGX6) | Toxoplasma gondii | |
| 16 | P (Bl) | Putative 30S ribosomal protein S16 | polymer | 167 | 19450.7 | 1 | UniProt (A0A7J6KCY1) Pfam (PF00886) UniProt (by SIFTS) (A0A125YN27) | Toxoplasma gondii | |
| 17 | Q (Bm) | Putative ribosomal protein S17 | polymer | 116 | 14084.4 | 1 | UniProt (A0A125YU94) Pfam (PF00366) UniProt (by SIFTS) (A0A125YU95) | Toxoplasma gondii | |
| 18 | R (Bn) | Putative ribosomal protein S18 | polymer | 738 | 84433.2 | 1 | UniProt (S7VTU6) Pfam (PF01084) UniProt (by SIFTS) (S8F879) | Toxoplasma gondii | |
| 19 | S (Bo) | Ribosomal protein, bS21m | polymer | 243 | 28104.5 | 1 | UniProt (S8G0I7) | Toxoplasma gondii | |
| 20 | T (Bp) | mS23 | polymer | 377 | 41599.4 | 1 | UniProt (A0A7J6K2Y2) UniProt (by SIFTS) (S8G6C8) | Toxoplasma gondii | |
| 21 | U (Bq) | Mitochondrial ribosomal protein, mS26 | polymer | 447 | 51592.3 | 1 | UniProt (A0A086KM95) UniProt (by SIFTS) (S8G5S9) | Toxoplasma gondii | |
| 22 | V (Br) | Small ribosomal subunit protein mS29 | polymer | 545 | 63068.1 | 1 | UniProt (A0A7J6JWV4) Pfam (PF10236) UniProt (by SIFTS) (S8GCU6) | Toxoplasma gondii | |
| 23 | W (Bs) | DNA double-strand break repair rad50 ATPase | polymer | 616 | 69085.6 | 1 | UniProt (A0A7J6K0I6) UniProt (by SIFTS) (S8ETI9) | Toxoplasma gondii | |
| 24 | X (Bt) | mS34 | polymer | 302 | 34185.0 | 1 | UniProt (A0A7J6JYF4) UniProt (by SIFTS) (S8ETC4) | Toxoplasma gondii | |
| 25 | Y (Bu) | Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein | polymer | 584 | 63908.6 | 1 | UniProt (A0A7J6K5S5) Pfam (PF10213) UniProt (by SIFTS) (S8F5W4) | Toxoplasma gondii | |
| 26 | Z (Bv) | CHCH domain-containing protein | polymer | 138 | 16112.7 | 1 | UniProt (A0A7J6JX47) UniProt (by SIFTS) (A0A125YXL8) | Toxoplasma gondii | |
| 27 | AA (Bx) | Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein | polymer | 263 | 30027.6 | 1 | UniProt (A0A0F7UNZ9) | Toxoplasma gondii | |
| 28 | BA (By) | Homeodomain-like containing protein | polymer | 597 | 66947.2 | 1 | UniProt (A0A7J6KAD0) UniProt (by SIFTS) (S8F351) | Toxoplasma gondii | |
| 29 | CA (Bz) | mS45 | polymer | 531 | 59593.6 | 1 | UniProt (A0A7J6JZ68) UniProt (by SIFTS) (S8EVV8) | Toxoplasma gondii | |
| 30 | DA (Ua) | UNK1 | polymer | 20 | 1720.1 | 1 | Toxoplasma gondii | ||
| 31 | EA (Ub) | UNK2 | polymer | 7 | 541.6 | 1 | Toxoplasma gondii | ||
| 32 | FA (Uc) | UNK3 | polymer | 10 | 869.1 | 1 | Toxoplasma gondii | ||
| 33 | GA (Ud) | UNK4 | polymer | 72 | 6384.9 | 1 | Toxoplasma gondii | ||
| 34 | HA (Uh) | Chain Uh | polymer | 56 | 5997.8 | 1 | Toxoplasma gondii | ||
| 35 | IA, KA (Ui, Uk) | Unknown peptide | polymer | 13 | 1124.4 | 2 | Toxoplasma gondii | ||
| 36 | JA (Uj) | Chain Uj | polymer | 60 | 5124.3 | 1 | Toxoplasma gondii | ||
| 37 | LA (Ul) | GLY-ARG-SER-LYS-VAL-LEU-ILE-ARG-ARG-LEU-LYS-GLU-ARG-ALA-LYS-LYS-GLU-ALA-GLU-LYS-LYS-ALA | polymer | 22 | 2605.2 | 1 | Toxoplasma gondii | ||
| 38 | MA (Um) | ARG-ALA-GLU-LEU-VAL-ALA-ALA-GLN-VAL-ARG-GLU-LYS-LEU-ALA-ILE-LYS-MET-ALA-ASN-ALA-LEU-ALA | polymer | 22 | 2370.9 | 1 | Toxoplasma gondii | ||
| 39 | NA (Un) | Chain Un | polymer | 24 | 2785.1 | 1 | Toxoplasma gondii | ||
| 40 | OA (Uo) | chain Uo | polymer | 26 | 2230.7 | 1 | Toxoplasma gondii | ||
| 41 | PA (Up) | chain Up | polymer | 24 | 2060.5 | 1 | Toxoplasma gondii | ||
| 42 | QA (Uq) | chain Uq | polymer | 32 | 2842.5 | 1 | Toxoplasma gondii | ||
| 43 | RA (Ya) | mS117 | polymer | 551 | 60305.1 | 1 | UniProt (S7V2J1) UniProt (by SIFTS) (S8F063) | Toxoplasma gondii | |
| 44 | SA (Yb) | ATP-dependent Clp protease proteolytic subunit,related protein | polymer | 1048 | 116313.7 | 1 | UniProt (A0A7J6K1B3) UniProt (by SIFTS) (S8G6E6) | Toxoplasma gondii | |
| 45 | TA (Yc) | mS119 | polymer | 268 | 28744.8 | 1 | UniProt (A0A7J6KFI1) UniProt (by SIFTS) (S8GJU2) | Toxoplasma gondii | |
| 46 | UA (Yd) | mS120 | polymer | 680 | 75017.6 | 1 | UniProt (A0A7J6K8Y5) UniProt (by SIFTS) (S8GGX8) | Toxoplasma gondii | |
| 47 | VA (Ye) | mS121 | polymer | 304 | 34469.5 | 1 | UniProt (A0A7J6JZ58) UniProt (by SIFTS) (A0A125YYT2) | Toxoplasma gondii | |
| 48 | WA (Yf) | Macro domain-containing protein | polymer | 698 | 75947.3 | 1 | UniProt (A0A7J6K475) Pfam (PF01661) UniProt (by SIFTS) (S8GKJ3) | Toxoplasma gondii | |
| 49 | XA (Yg) | Thioredoxin domain-containing protein | polymer | 940 | 102709.0 | 1 | UniProt (A0A7J6K257) UniProt (by SIFTS) (S8F8D3) | Toxoplasma gondii | |
| 50 | YA (Yh) | mS124 | polymer | 280 | 30802.6 | 1 | UniProt (by SIFTS) (A0A0F7VBJ0) | Toxoplasma gondii | |
| 51 | ZA (Yi) | mS125 | polymer | 930 | 100897.0 | 1 | UniProt (A0A7J6JYP0) UniProt (by SIFTS) (S8G3J1) | Toxoplasma gondii | |
| 52 | AB (Yj) | DnaJ domain-containing protein | polymer | 233 | 25359.9 | 1 | UniProt (A0A7J6KC34) UniProt (by SIFTS) (A0A125YYG6) | Toxoplasma gondii | |
| 53 | BB (Yk) | RAP domain-containing protein | polymer | 1547 | 168668.8 | 1 | UniProt (A0A7J6KGV4) UniProt (by SIFTS) (S8GUD6) | Toxoplasma gondii | |
| 54 | CB (Yl) | mS128 | polymer | 316 | 34440.7 | 1 | UniProt (A0A7J6KEX1) UniProt (by SIFTS) (S8GU15) | Toxoplasma gondii | |
| 55 | DB (Ym) | RAP domain-containing protein | polymer | 801 | 86967.6 | 1 | UniProt (A0A7J6K7K5) UniProt (by SIFTS) (S8F0U0) | Toxoplasma gondii | |
| 56 | EB (Yn) | AP2 domain transcription factor AP2IX-6 | polymer | 432 | 47928.0 | 1 | UniProt (A0A7J6KDC3) UniProt (by SIFTS) (S8G8E7) | Toxoplasma gondii | |
| 57 | FB (Yo) | mS131 | polymer | 421 | 48451.8 | 1 | UniProt (A0A7J6KFW2) UniProt (by SIFTS) (A0A125YG13) | Toxoplasma gondii | |
| 58 | GB (Yp) | mS132 | polymer | 181 | 19356.3 | 1 | UniProt (A0A7J6K2N1) UniProt (by SIFTS) (S8G684) | Toxoplasma gondii | |
| 59 | HB (Yr) | Acylphosphatase-like domain-containing protein | polymer | 235 | 27403.4 | 1 | UniProt (A0A125YXT0) UniProt (by SIFTS) (A0A125YXT1) | Toxoplasma gondii | |
| 60 | IB (Ys) | mS135 | polymer | 181 | 21353.7 | 1 | UniProt (A0A7J6K0G8) UniProt (by SIFTS) (S8GML4) | Toxoplasma gondii | |
| 61 | JB (Yt) | mS136 | polymer | 475 | 50588.8 | 1 | UniProt (A0A7J6K0Z5) UniProt (by SIFTS) (S8EW95) | Toxoplasma gondii | |
| 62 | KB (Yu) | mS137 | polymer | 367 | 40442.0 | 1 | Toxoplasma gondii | ||
| 63 | LB (Yq) | mS133 | polymer | 302 | 31972.0 | 1 | UniProt (B9PYD6) UniProt (by SIFTS) (A0A125YMK3) | Toxoplasma gondii | |
| 64 | MB (SA) | SSU-1 | polymer | 91 | 29088.3 | 1 | Toxoplasma gondii | ||
| 65 | NB (SB) | SSU-2 | polymer | 28 | 9185.6 | 1 | Toxoplasma gondii | ||
| 66 | OB (SC) | SSU-3 | polymer | 23 | 7468.5 | 1 | Toxoplasma gondii | ||
| 67 | PB (SD) | SSU-4 | polymer | 47 | 15105.9 | 1 | Toxoplasma gondii | ||
| 68 | QB (SE) | SSU-5 | polymer | 73 | 23627.2 | 1 | Toxoplasma gondii | ||
| 69 | RB (SF) | SSU-6 | polymer | 120 | 38630.1 | 1 | Toxoplasma gondii | ||
| 70 | SB (SG) | SSU-7 | polymer | 26 | 8277.8 | 1 | Toxoplasma gondii | ||
| 71 | TB (SH) | SSU-8 | polymer | 25 | 8142.0 | 1 | Toxoplasma gondii | ||
| 72 | UB (SI) | SSU-9 | polymer | 53 | 17142.4 | 1 | Toxoplasma gondii | ||
| 73 | VB (SJ) | SSU-10 | polymer | 93 | 29992.8 | 1 | Toxoplasma gondii | ||
| 74 | WB (SK) | SSU-11 | polymer | 114 | 36511.5 | 1 | Toxoplasma gondii | ||
| 75 | XB (SL) | SSU-12 | polymer | 28 | 8951.3 | 1 | Toxoplasma gondii | ||
| 76 | YB (SM) | SSU-13 | polymer | 75 | 23947.1 | 1 | Toxoplasma gondii | ||
| 77 | ZB (SN) | SSU-14 | polymer | 24 | 7857.9 | 1 | Toxoplasma gondii | ||
| 78 | AC (SO) | SSU-15 | polymer | 16 | 5098.1 | 1 | Toxoplasma gondii | ||
| 79 | BC (SP) | SSU-16 | polymer | 33 | 10632.4 | 1 | Toxoplasma gondii | ||
| 80 | CC (SQ) | SSU-17 | polymer | 56 | 18121.8 | 1 | Toxoplasma gondii | ||
| 81 | DC (SR) | SSU-18 | polymer | 34 | 10786.5 | 1 | Toxoplasma gondii | ||
| 82 | EC (SS) | SSU-19 | polymer | 12 | 3811.3 | 1 | Toxoplasma gondii | ||
| 83 | FC (ST) | SSU-20 | polymer | 24 | 7859.8 | 1 | Toxoplasma gondii | ||
| 84 | GC (SU) | SSU-21 | polymer | 54 | 17588.6 | 1 | Toxoplasma gondii | ||
| 85 | HC (TP) | tRNA E-site | polymer | 21 | 6716.0 | 1 | Toxoplasma gondii | ||
| 86 | IC (UC) | Chain UC | polymer | 31 | 9971.9 | 1 | Toxoplasma gondii | ||
| 87 | JC (Yv) | mS138 | polymer | 419 | 44338.7 | 1 | UniProt (A0A7J6K328) UniProt (by SIFTS) (S8GBT4) | Toxoplasma gondii | |
| 88 | KC (Br) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 89 | LC (Br) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 90 | MC (Yp) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
Ym: 1 - 801 (UniProt: A0A7J6K7K5)
| PDB | External Database | Details |
|---|---|---|
| Arg 200 | Gly 200 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 88 |
| Total formula weight | 2927075.1 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 596.9 | |
| All* | Total formula weight | 2927672.0 |
