Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9HNY

Mitoribosomal small subunit in complex with Mettl15 and Mettl17

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (CA)	9S RNA	polymer	620	198135.2	1	GenBank (X02547.1)	Trypanosoma brucei
2	B (CC)	uS3m	polymer	74	9070.9	1		Trypanosoma brucei
3	C (CE)	Small ribosomal subunit protein uS5 C-terminal domain-containing protein	polymer	435	50119.3	1	UniProt (Q38AX6) Pfam (PF03719)	Trypanosoma brucei
4	D (CF)	bS6m	polymer	160	18861.5	1	UniProt (Q38BW5)	Trypanosoma brucei
5	E (CH)	30S ribosomal protein S8	polymer	282	32766.5	1	UniProt (A0A3L6KZN8) Pfam (PF00410) UniProt (by SIFTS) (Q388R7)	Trypanosoma brucei
6	F (CI)	Ribosomal protein S9/S16	polymer	443	50229.1	1	UniProt (A0A3L6L332) Pfam (PF00380) UniProt (by SIFTS) (Q57W62)	Trypanosoma brucei
7	G (CJ)	LysM domain-containing protein	polymer	817	94389.1	1	UniProt (Q57Z45) Pfam (PF01476)	Trypanosoma brucei
8	H (CK)	uS11m	polymer	326	37954.0	1	UniProt (Q389T7)	Trypanosoma brucei
9	I (CN)	uS14m	polymer	158	18956.8	1	UniProt (A0A3L6L312) UniProt (by SIFTS) (Q580I0)	Trypanosoma brucei
10	J (CO)	Mitochondrial ribosomal protein S15	polymer	429	50401.2	1	UniProt (A0A3L6LDF7) UniProt (by SIFTS) (Q4GZ99)	Trypanosoma brucei
11	K (CP)	bS16m	polymer	188	22077.8	1	UniProt (Q384N9)	Trypanosoma brucei
12	L (CQ)	uS17m	polymer	336	39012.4	1	Pfam (PF00366) UniProt (by SIFTS) (Q38DP8)	Trypanosoma brucei
13	M (CR)	Mitochondrial ribosomal protein S18	polymer	320	36988.7	1	UniProt (A0A3L6L122) UniProt (by SIFTS) (Q38AS2)	Trypanosoma brucei
14	N (CS)	uS19m	polymer	244	28364.6	1	UniProt (by SIFTS) (Q584T8)	Trypanosoma brucei
15	O (Ca)	Chromosome passenger complex (CPC) protein INCENP N terminal	polymer	602	73064.1	1	UniProt (Q38DR3)	Trypanosoma brucei
16	P (Cb)	mS23	polymer	311	35358.8	1	UniProt (A0A3L6L708) UniProt (by SIFTS) (Q57VB2)	Trypanosoma brucei
17	Q (Cd)	mS26	polymer	440	51136.7	1	UniProt (A0A3L6L151) UniProt (by SIFTS) (Q38DK6)	Trypanosoma brucei
18	R (Cg)	Mitochondrial SSU ribosomal protein 29	polymer	490	56334.0	1	UniProt (Q585C2) Pfam (PF10236)	Trypanosoma brucei
19	S (Ci)	mS33	polymer	181	21244.1	1	UniProt (A0A3L6LBN2) UniProt (by SIFTS) (Q57WW0)	Trypanosoma brucei
20	T (Cj)	mS34	polymer	257	28728.2	1	UniProt (A0A3L6LCQ0) UniProt (by SIFTS) (Q57UK0)	Trypanosoma brucei
21	U (Ck)	mS35	polymer	874	98361.8	1	UniProt (Q387C7)	Trypanosoma brucei
22	V (Cn)	mS38	polymer	250	28240.6	1	UniProt (A0A3L6L7V5) UniProt (by SIFTS) (Q57VQ9)	Trypanosoma brucei
23	W (Cp)	Protein FYV4, mitochondrial	polymer	187	22421.5	1	UniProt (A0A3L6L0Z8) Pfam (PF09597) UniProt (by SIFTS) (Q389L3)	Trypanosoma brucei
24	X (DB)	mS49	polymer	1181	137109.0	1	UniProt (Q586P5)	Trypanosoma brucei
25	Y (DC)	mS50	polymer	1165	131751.2	1	UniProt (Q57YB5)	Trypanosoma brucei
26	Z (DD)	mS51	polymer	812	95099.0	1	UniProt (Q385L8)	Trypanosoma brucei
27	AA (DE)	Mitochondrial SSU ribosomal protein	polymer	747	84998.2	1	UniProt (Q386Q7)	Trypanosoma brucei
28	BA (DF)	mS53	polymer	666	75251.9	1	UniProt (Q38ET1)	Trypanosoma brucei
29	CA (DG)	mS54	polymer	631	72046.0	1	UniProt (A0A3L6L8G2) UniProt (by SIFTS) (Q57ZP8)	Trypanosoma brucei
30	DA (DH)	mS55	polymer	581	66756.8	1	UniProt (Q580V1)	Trypanosoma brucei
31	EA (DI)	mS56	polymer	407	47248.8	1	UniProt (Q587C2)	Trypanosoma brucei
32	FA (DJ)	mS57	polymer	396	45956.3	1	UniProt (Q584U8)	Trypanosoma brucei
33	GA (DK)	mS58	polymer	324	35664.0	1	UniProt (Q38BP1)	Trypanosoma brucei
34	HA (DL)	mS59	polymer	307	35395.7	1	UniProt (A0A3L6KXC4) UniProt (by SIFTS) (Q38BS2)	Trypanosoma brucei
35	IA (DO)	mS62	polymer	282	32068.1	1	UniProt (A0A3L6KX59) UniProt (by SIFTS) (Q383D1)	Trypanosoma brucei
36	JA (DP)	mS63	polymer	274	31922.2	1	UniProt (C9ZXR0) UniProt (by SIFTS) (Q38F25)	Trypanosoma brucei
37	KA (DR)	mS65	polymer	270	30680.4	1	UniProt (Q57UA2)	Trypanosoma brucei
38	LA (DT)	Rhodanese domain-containing protein	polymer	247	30096.1	1	UniProt (Q586G5) Pfam (PF00581)	Trypanosoma brucei
39	MA (DU)	Ubiquitin-like domain-containing protein	polymer	228	26458.8	1	UniProt (Q582T9) Pfam (PF00240)	Trypanosoma brucei
40	NA (DV)	mS69	polymer	183	21619.8	1	UniProt (A0A3L6L4I3) UniProt (by SIFTS) (Q57UZ6)	Trypanosoma brucei
41	OA (DW)	mS70	polymer	179	21277.5	1	UniProt (Q383N9)	Trypanosoma brucei
42	PA (DX)	mS71	polymer	169	20093.2	1	UniProt (A0A3L6KVH3) UniProt (by SIFTS) (Q383G5)	Trypanosoma brucei
43	QA (DY)	mS72	polymer	163	19317.3	1	UniProt (A0A3L6L8T2) UniProt (by SIFTS) (Q57YD4)	Trypanosoma brucei
44	RA (DZ)	mS73	polymer	94	11360.9	1	UniProt (A0A3L6L904) UniProt (by SIFTS) (Q587C4)	Trypanosoma brucei
45	SA (F1)	Mitochondrial small ribosomal subunit Rsm22	polymer	1041	119799.4	1	UniProt (D0A703) Pfam (PF09243) UniProt (by SIFTS) (Q385R2)	Trypanosoma brucei
46	TA (F2)	Pentacotripeptide-repeat region of PRORP domain-containing protein	polymer	1024	116103.5	1	UniProt (Q4GYS4) Pfam (PF17177) Pfam (PF13812) Pfam (PF01535)	Trypanosoma brucei
47	UA (F3)	mt-SAF3	polymer	966	106621.7	1	UniProt (Q38E61)	Trypanosoma brucei
48	VA (F4)	Methyltranfer_dom domain-containing protein	polymer	811	91520.2	1	UniProt (Q38BY6)	Trypanosoma brucei
49	WA (F5)	Kinteoplast poly(A) polymerase complex 1 subunit	polymer	754	86901.3	1	UniProt (Q381K1)	Trypanosoma brucei
50	XA (F6)	DUF4460 domain-containing protein	polymer	676	76781.4	1	UniProt (A0A3L6L7Z3) Pfam (PF14687) UniProt (by SIFTS) (Q38FQ8)	Trypanosoma brucei
51	YA (F7)	mt-SAF7 (KRIPP10)	polymer	679	76635.1	1	UniProt (Q57UW6)	Trypanosoma brucei
52	ZA (F8)	Cupin type-1 domain-containing protein	polymer	726	76474.9	1	UniProt (Q57W22)	Trypanosoma brucei
53	AB (F9)	Trichohyalin	polymer	608	69816.8	1	UniProt (Q57YC0)	Trypanosoma brucei
54	BB (FA)	mt-SAF10	polymer	642	69311.8	1	UniProt (Q386U1)	Trypanosoma brucei
55	CB, DB (FB, FC)	tRNA pseudouridine synthase A-like protein	polymer	588	65949.2	2	UniProt (A0A1G4II72) UniProt (by SIFTS) (D0A0P7)	Trypanosoma brucei
56	EB (FD)	PPR_long domain-containing protein	polymer	579	65049.2	1	UniProt (Q583U2)	Trypanosoma brucei
57	FB (FE)	mt-SAF13	polymer	553	63690.7	1	UniProt (D0A7Q0) UniProt (by SIFTS) (Q384U7)	Trypanosoma brucei
58	GB (FF)	S-adenosyl-methyltransferase mraW-like protein	polymer	474	53320.8	1	UniProt (A0A3L6L433) Pfam (PF01795) UniProt (by SIFTS) (Q57W60)	Trypanosoma brucei
59	HB (FG)	mt-SAF15	polymer	463	53273.9	1	UniProt (A0A3L6KUN2) UniProt (by SIFTS) (Q387N4)	Trypanosoma brucei
60	IB (FH)	mt-SAF16 (P32)	polymer	457	50911.4	1	UniProt (D0A6K1) Pfam (PF02330) UniProt (by SIFTS) (Q386E5)	Trypanosoma brucei
61	JB (FI)	mt-SAF17	polymer	445	50147.6	1	UniProt (A0A3L6KSV0) UniProt (by SIFTS) (Q386T7)	Trypanosoma brucei
62	KB (FJ)	mt-SAF18 (RbfA)	polymer	362	42538.1	1	UniProt (Q383L9)	Trypanosoma brucei
63	LB (FK)	Mitochondrial glycoprotein	polymer	372	41236.4	1	UniProt (Q57XS8) Pfam (PF02330)	Trypanosoma brucei
64	MB (FL)	Metallo-beta-lactamase domain-containing protein	polymer	353	40369.9	1	UniProt (Q57XC4) Pfam (PF00753)	Trypanosoma brucei
65	NB, OB (FM, FN)	mt-SAF21	polymer	370	39610.8	2	UniProt (C9ZJW2) Pfam (PF03446) Pfam (PF14833) UniProt (by SIFTS) (Q57WY0)	Trypanosoma brucei
66	PB (FO)	mt-SAF22	polymer	334	39132.6	1	UniProt (Q389F9)	Trypanosoma brucei
67	QB (FP)	ADP-ribosylglycohydrolase	polymer	349	38307.3	1	UniProt (Q382Z4)	Trypanosoma brucei
68	RB, SB, TB, UB, VB (FQ, FR, FS, FT, FU)	Potassium voltage-gated channel, putative	polymer	307	34648.0	5	UniProt (Q387P8) Pfam (PF02214)	Trypanosoma brucei
69	WB (FV)	mt-SAF25	polymer	264	29470.5	1	UniProt (Q38C60)	Trypanosoma brucei
70	XB (FW)	Low molecular weight protein tyrosine phosphatase	polymer	263	30538.6	1	UniProt (A0A3L6L1H2) Pfam (PF01451) UniProt (by SIFTS) (Q38FI3)	Trypanosoma brucei
71	YB (FX)	PPR_long domain-containing protein	polymer	239	26936.7	1	UniProt (Q57YK5) Pfam (PF13812)	Trypanosoma brucei
72	ZB (FY)	mt-SAF28	polymer	189	21581.8	1	UniProt (Q584U9)	Trypanosoma brucei
73	AC (FZ)	mt-SAF29	polymer	178	20048.5	1	UniProt (A0A3L6KWY8) UniProt (by SIFTS) (Q38AC7)	Trypanosoma brucei
74	BC (Fa)	mt-SAF30	polymer	171	19687.8	1	UniProt (Q57VU7)	Trypanosoma brucei
75	CC (Fb)	Complex 1 protein (LYR family)	polymer	151	17673.5	1	UniProt (A0A3L6LFP2) UniProt (by SIFTS) (Q581U4)	Trypanosoma brucei
76	DC (Fc)	Acyl carrier protein	polymer	148	16550.8	1	UniProt (Q57WW9) Pfam (PF00550)	Trypanosoma brucei
77	EC (Fd)	Probable Zinc-ribbon domain-containing protein	polymer	143	16291.1	1	UniProt (A0A3L6L9W2) Pfam (PF14311) UniProt (by SIFTS) (Q581T4)	Trypanosoma brucei
78	FC (Fe)	mt-SAF34	polymer	123	14862.9	1	UniProt (A0A3L6KU34) UniProt (by SIFTS) (Q387L0)	Trypanosoma brucei
79	GC (Fi)	mt-SAF38	polymer	629	69573.7	1	UniProt (Q57ZP1)	Trypanosoma brucei
80	HC (UA)	UNK-A	polymer	27	2315.8	1		Trypanosoma brucei
81	IC (UB)	UNK-B	polymer	6	528.6	1		Trypanosoma brucei
82	JC (UC)	UNK-C	polymer	10	869.1	1		Trypanosoma brucei
83	KC (UF)	UNK-F	polymer	11	954.2	1		Trypanosoma brucei
84	LC, NC (UG, UJ)	UNK-G,J	polymer	16	1379.7	2		Trypanosoma brucei
85	MC (UI)	UNK-I	polymer	8	698.9	1		Trypanosoma brucei
86	OC (UK)	UNK-K	polymer	24	2060.5	1		Trypanosoma brucei
87	PC (UL)	UNK-L	polymer	22	1890.3	1		Trypanosoma brucei
88	QC, UC (UM, UQ)	UNK-M,Q	polymer	9	784.0	2		Trypanosoma brucei
89	RC (UN)	UNK-N	polymer	7	613.7	1		Trypanosoma brucei
90	SC (UO)	UNK-O	polymer	30	2571.2	1		Trypanosoma brucei
91	TC (UP)	UNK-P	polymer	45	3847.7	1		Trypanosoma brucei
92	VC (UY)	UNK-Y	polymer	85	7251.9	1		Trypanosoma brucei
93	WC (Ud)	UNK-d	polymer	59	5039.2	1		Trypanosoma brucei
94	XC (Ug)	UNK-g	polymer	167	14230.5	1		Trypanosoma brucei
95	YC (Uh)	UNK-h	polymer	263	22400.5	1		Trypanosoma brucei
96	ZC (Uk)	UNK-k	polymer	31	2656.3	1		Trypanosoma brucei
97	AD (Ul)	UNK-l	polymer	14	1209.5	1		Trypanosoma brucei
98	BD (Cg)	GUANOSINE-5'-TRIPHOSPHATE	non-polymer		523.2	1	Chemie (GTP)
99	CD (Cg)	MAGNESIUM ION	non-polymer		24.3	1	Chemie (MG)
100	DD (F1)	IRON/SULFUR CLUSTER	non-polymer		351.6	1	Chemie (SF4)
101	ED, GD (F1, FF)	S-ADENOSYLMETHIONINE	non-polymer		398.4	2	Chemie (SAM)
102	FD (F3)	ACETYL COENZYME *A	non-polymer		809.6	1	Chemie (ACO)
103	HD, ID, KD, LD (FG, FL, Fd, Fe)	ZINC ION	non-polymer		65.4	4	Chemie (ZN)
104	JD (FW)	PHOSPHATE ION	non-polymer		95.0	1	Chemie (PO4)

Sequence modifications

CA: 1 - 620 (GenBank: X02547.1)

PDB	External Database	Details
U 614	A 1802	conflict
U 615	G 1803	conflict
U 616	C 1804	conflict
U 618	A 1806	conflict
U 619	A 1807	conflict
U 620	A 1808	conflict

CK: 1 - 326 (UniProt: Q389T7)

PDB	External Database	Details
Arg 3	Gln 3	conflict

Cb: 1 - 311 (UniProt: A0A3L6L708)

PDB	External Database	Details
Val 6	Glu 6	conflict

Cg: 1 - 490 (UniProt: Q585C2)

PDB	External Database	Details
Val 181	Ala 181	conflict

Ck: 1 - 874 (UniProt: Q387C7)

PDB	External Database	Details
Ser 107	Leu 107	conflict
Phe 144	Leu 144	conflict
Glu 339	Val 339	conflict
Gly 871	Glu 871	conflict

F1: 1 - 1041 (UniProt: D0A703)

PDB	External Database	Details
Arg 695	Cys 695	conflict
Ser 707	Gly 707	conflict

F3: 1 - 966 (UniProt: Q38E61)

PDB	External Database	Details
Thr 44	Ala 44	conflict
Val 190	Ile 190	conflict
Ala 303	Ser 303	conflict
Asp 418	Asn 418	conflict

F6: 1 - 676 (UniProt: A0A3L6L7Z3)

PDB	External Database	Details
Val 88	Ala 88	conflict
Val 192	Leu 192	conflict
Val 246	Leu 246	conflict
Ile 291	Thr 291	conflict

FB, FC: 1 - 598 (UniProt: A0A1G4II72)

PDB	External Database	Details
Thr 385	Ala 375	conflict

FF: 1 - 474 (UniProt: A0A3L6L433)

PDB	External Database	Details
Gly 106	Cys 106	conflict
Ala 259	Val 259	conflict

FH: 1 - 457 (UniProt: D0A6K1)

PDB	External Database	Details
Asp 169	His 169	conflict
Met 260	Arg 260	conflict

FK: 1 - 372 (UniProt: Q57XS8)

PDB	External Database	Details
His 38	Arg 38	conflict

FM, FN: 1 - 370 (UniProt: C9ZJW2)

PDB	External Database	Details
His 326	Arg 326	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	105
Polymers	Total formula weight	4343373.6
Non-Polymers*	Number of molecules	11
Non-Polymers*	Total formula weight	2862.2
All*	Total formula weight	4346235.8

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)