9HM0
Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Small ribosomal subunit protein mS38 | polymer | 111 | 12800.4 | 1 | UniProt (P32344) Pfam (PF08213) | Saccharomyces cerevisiae W303 | Mitochondrial mRNA-processing protein COX24 |
| 2 | B (2) | Small ribosomal subunit protein mS41 | polymer | 130 | 15321.7 | 1 | UniProt (P38783) Pfam (PF09597) | Saccharomyces cerevisiae W303 | Function required for yeast viability protein 4,Protein FYV4,mitochondrial |
| 3 | C (3) | Small ribosomal subunit protein mS42 | polymer | 266 | 30257.4 | 1 | UniProt (P47141) Pfam (PF02777) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S26,mitochondrial |
| 4 | D (4) | Small ribosomal subunit protein mS43 | polymer | 321 | 36775.8 | 1 | UniProt (P10662) Pfam (PF02777) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP1,mitochondrial |
| 5 | E (5) | Small ribosomal subunit protein mS27 | polymer | 339 | 39045.0 | 1 | UniProt (P12686) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP13,mitochondrial,Small ribosomal subunit protein mS44,YmS-A |
| 6 | F (6) | Small ribosomal subunit protein mS45 | polymer | 345 | 39638.2 | 1 | UniProt (P53292) Pfam (PF12298) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S35,mitochondrial |
| 7 | G (7) | Small ribosomal subunit protein mS46 | polymer | 361 | 41282.0 | 1 | UniProt (Q03430) | Saccharomyces cerevisiae W303 | 37S ribosomal protein RSM28,mitochondrial |
| 8 | H (8) | Small ribosomal subunit protein mS47 | polymer | 500 | 56351.2 | 1 | UniProt (P28817) Pfam (PF16113) | Saccharomyces cerevisiae W303 | 3-hydroxyisobutyryl-CoA hydrolase,mitochondrial,3-hydroxyisobutyryl-coenzyme A hydrolase,HIB-CoA hydrolase,HIBYL-CoA-H |
| 9 | I (A) | Small ribosomal subunit protein bS1m | polymer | 344 | 39507.5 | 1 | UniProt (Q02950) Pfam (PF11709) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP51,mitochondrial |
| 10 | J (B) | Small ribosomal subunit protein uS2m | polymer | 394 | 44205.7 | 1 | UniProt (P32902) Pfam (PF00318) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP4,mitochondrial |
| 11 | K (C) | Small ribosomal subunit protein uS3m | polymer | 398 | 47171.0 | 1 | UniProt (P02381) Pfam (PF05316) | Saccharomyces cerevisiae W303 | Ribosomal protein VAR1,mitochondrial |
| 12 | L (D) | Small ribosomal subunit protein uS4m | polymer | 486 | 56450.9 | 1 | UniProt (P27929) Pfam (PF01479) | Saccharomyces cerevisiae W303 | 37S ribosomal protein NAM9,mitochondrial,Nuclear accommodation of mitochondria protein 9 |
| 13 | M (E) | Small ribosomal subunit protein uS5m | polymer | 307 | 34941.1 | 1 | UniProt (P33759) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S5,mitochondrial |
| 14 | N (F) | Small ribosomal subunit protein bS6m | polymer | 131 | 15046.7 | 1 | UniProt (P28778) Pfam (PF01250) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP17,mitochondrial,YmS16 |
| 15 | O (G) | Small ribosomal subunit protein uS7m | polymer | 247 | 27857.1 | 1 | UniProt (P47150) Pfam (PF00177) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S7,mitochondrial |
| 16 | P (H) | Small ribosomal subunit protein uS8m | polymer | 155 | 17496.6 | 1 | UniProt (Q03799) Pfam (PF00410) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S8,mitochondrial |
| 17 | Q (I) | Small ribosomal subunit protein uS9m | polymer | 278 | 31980.3 | 1 | UniProt (P38120) Pfam (PF00380) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S9,mitochondrial |
| 18 | R (J) | Small ribosomal subunit protein uS10m | polymer | 203 | 23458.9 | 1 | UniProt (Q03201) Pfam (PF00338) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S10,mitochondrial |
| 19 | S (K) | Small ribosomal subunit protein uS11m | polymer | 217 | 24603.4 | 1 | UniProt (P42847) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S18,mitochondrial,YmS18 |
| 20 | T (L) | Small ribosomal subunit protein uS12m | polymer | 153 | 16948.7 | 1 | UniProt (P53732) Pfam (PF00164) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S12,mitochondrial |
| 21 | U (M) | Small ribosomal subunit protein uS13m | polymer | 143 | 16087.0 | 1 | UniProt (P53937) Pfam (PF00416) | Saccharomyces cerevisiae W303 | 37S ribosomal protein SWS2,mitochondrial,Sick without securin protein 2 |
| 22 | V (N) | Small ribosomal subunit protein uS14m | polymer | 115 | 13563.1 | 1 | UniProt (P10663) Pfam (PF00253) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP2,mitochondrial |
| 23 | W (O) | Small ribosomal subunit protein uS15m | polymer | 286 | 33116.4 | 1 | UniProt (P21771) Pfam (PF00312) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S28,mitochondrial |
| 24 | X (P) | Small ribosomal subunit protein bS16m | polymer | 121 | 13663.0 | 1 | UniProt (Q02608) Pfam (PF00886) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S16,mitochondrial |
| 25 | Y (Q) | Small ribosomal subunit protein uS17m | polymer | 237 | 27684.0 | 1 | UniProt (Q03246) Pfam (PF00366) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S17,mitochondrial |
| 26 | Z (R) | Small ribosomal subunit protein bS18m | polymer | 138 | 15866.5 | 1 | UniProt (P40033) Pfam (PF01084) | Saccharomyces cerevisiae W303 | 37S ribosomal protein RSM18,mitochondrial |
| 27 | AA (S) | Small ribosomal subunit protein uS19m | polymer | 91 | 10292.0 | 1 | UniProt (P53733) Pfam (PF00203) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S19,mitochondrial |
| 28 | BA (T) | Small ribosomal subunit protein bS21m | polymer | 177 | 20432.7 | 1 | UniProt (P38175) Pfam (PF01165) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP21,mitochondrial |
| 29 | CA (U) | Small ribosomal subunit protein mS23 | polymer | 264 | 30554.4 | 1 | UniProt (P40496) Pfam (PF13741) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S25,mitochondrial |
| 30 | DA (W) | Small ribosomal subunit protein mS29 | polymer | 450 | 50940.7 | 1 | UniProt (Q01163) Pfam (PF10236) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S23,mitochondrial,DAP-3 |
| 31 | EA (X) | Small ribosomal subunit protein mS33 | polymer | 110 | 12420.7 | 1 | UniProt (P53305) Pfam (PF08293) | Saccharomyces cerevisiae W303 | Mitochondrial 37S ribosomal protein S27 |
| 32 | FA (Y) | Small ribosomal subunit protein mS35 | polymer | 319 | 37458.5 | 1 | UniProt (Q03976) Pfam (PF10213) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S24,mitochondrial,Mitochondrial ribosomal small subunit protein 24 |
| 33 | GA (Z) | Small ribosomal subunit protein mS37 | polymer | 95 | 10709.6 | 1 | UniProt (O75012) Pfam (PF06747) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP10,mitochondrial,YmS-T |
| 34 | HA (a) | ATPase expression protein 3 | polymer | 606 | 70425.1 | 1 | UniProt (Q12089) Pfam (PF13812) | Saccharomyces cerevisiae W303 | |
| 35 | IA (t) | E/E-site formyl-methionine tRNA | polymer | 76 | 24234.3 | 1 | Saccharomyces cerevisiae W303 | ||
| 36 | JA (00) | Large ribosomal subunit protein bL36m | polymer | 93 | 10719.0 | 1 | UniProt (O14464) Pfam (PF00444) | Saccharomyces cerevisiae W303 | 54S ribosomal protein RTC6,mitochondrial,Restriction of telomere capping protein 6,Translation associated element 4 |
| 37 | KA (11) | Large ribosomal subunit protein mL38 | polymer | 367 | 42886.1 | 1 | UniProt (Q06678) Pfam (PF01161) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L35,mitochondrial,YmL35 |
| 38 | LA (22) | Large ribosomal subunit protein mL40 | polymer | 147 | 17373.3 | 1 | UniProt (P36527) Pfam (PF09812) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L28,mitochondrial,YmL28 |
| 39 | MA (33) | Large ribosomal subunit protein mL41 | polymer | 146 | 16521.1 | 1 | UniProt (P36526) Pfam (PF09809) | Saccharomyces cerevisiae (brewer's yeast) | 54S ribosomal protein L27,mitochondrial,YmL27 |
| 40 | NA (44) | Large ribosomal subunit protein mL43 | polymer | 140 | 16153.7 | 1 | UniProt (Q06090) Pfam (PF05047) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L51,mitochondrial |
| 41 | OA (55) | Large ribosomal subunit protein mL44 | polymer | 390 | 44058.7 | 1 | UniProt (P36516) Pfam (PF00636) Pfam (PF22892) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L3,mitochondrial,YmL3 |
| 42 | PA (66) | Large ribosomal subunit protein mL46 | polymer | 281 | 32261.7 | 1 | UniProt (P36528) Pfam (PF11788) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L17,mitochondrial,YmL17/YmL30 |
| 43 | QA (77) | Large ribosomal subunit protein mL49 | polymer | 146 | 16406.2 | 1 | UniProt (P25642) Pfam (PF05046) | Saccharomyces cerevisiae W303 | 54S ribosomal protein IMG2,mitochondrial,Integrity of mitochondrial genome protein 2 |
| 44 | RA (88) | Large ribosomal subunit protein mL50 | polymer | 264 | 30317.4 | 1 | UniProt (Q02204) Pfam (PF10501) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L13,mitochondrial,YmL13 |
| 45 | SA (99) | Large ribosomal subunit protein mL57 | polymer | 253 | 28206.5 | 1 | UniProt (P36523) Pfam (PF00636) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L15,mitochondrial,YmL15 |
| 46 | TA (AA) | 21S mitochondrial rRNA | polymer | 3296 | 1057805.4 | 1 | Saccharomyces cerevisiae W303 | ||
| 47 | UA (BB) | Large ribosomal subunit protein uL2m | polymer | 393 | 43870.0 | 1 | UniProt (P32611) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae W303 | 54S ribosomal protein RML2,mitochondrial,L2 |
| 48 | VA (CC) | Large ribosomal subunit protein uL3m | polymer | 269 | 29843.5 | 1 | UniProt (P31334) Pfam (PF00297) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L9,mitochondrial,YmL9 |
| 49 | WA (DD) | Large ribosomal subunit protein uL4m | polymer | 286 | 32014.6 | 1 | UniProt (P51998) Pfam (PF00573) | Saccharomyces cerevisiae W303 | 54S ribosomal protein YmL6,mitochondrial |
| 50 | XA (EE) | Large ribosomal subunit protein uL5m | polymer | 292 | 33152.0 | 1 | UniProt (P36519) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L7,mitochondrial,YmL5,YmL7 |
| 51 | YA (FF) | Large ribosomal subunit protein uL6m | polymer | 214 | 23926.9 | 1 | UniProt (P32904) Pfam (PF00347) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L6,mitochondrial,YmL16 |
| 52 | ZA (GG) | Large ribosomal subunit protein bL9m | polymer | 139 | 16313.8 | 1 | UniProt (P53724) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L50,mitochondrial |
| 53 | AB (HH) | Large ribosomal subunit protein uL13m | polymer | 163 | 18499.5 | 1 | UniProt (Q12487) Pfam (PF00572) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L23,mitochondrial,YmL23 |
| 54 | BB (II) | Large ribosomal subunit protein uL14m | polymer | 138 | 14929.7 | 1 | UniProt (P35996) Pfam (PF00238) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L38,mitochondrial,YmL38 |
| 55 | CB (JJ) | Large ribosomal subunit protein uL15m | polymer | 322 | 36414.5 | 1 | UniProt (P36520) Pfam (PF00828) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L10,mitochondrial,YmL10/YmL18 |
| 56 | DB (KK) | Large ribosomal subunit protein uL16m | polymer | 232 | 26569.0 | 1 | UniProt (P38064) Pfam (PF00252) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L16,mitochondrial,YmL47 |
| 57 | EB (LL) | Large ribosomal subunit protein bL17m | polymer | 238 | 26989.4 | 1 | UniProt (P22353) Pfam (PF01196) Pfam (PF18502) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L8,mitochondrial,YmL8 |
| 58 | FB (MM) | Large ribosomal subunit protein bL19m | polymer | 169 | 19428.8 | 1 | UniProt (P25626) Pfam (PF01245) | Saccharomyces cerevisiae W303 | 54S ribosomal protein IMG1,mitochondrial,Integrity of mitochondrial genome protein 1,PetCR46 |
| 59 | GB (NN) | Large ribosomal subunit protein bL21m | polymer | 161 | 18420.5 | 1 | UniProt (P40858) Pfam (PF00829) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L49,mitochondrial,YmL49 |
| 60 | HB (OO) | Large ribosomal subunit protein uL22m | polymer | 309 | 34957.4 | 1 | UniProt (P53881) Pfam (PF00237) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L22,mitochondrial |
| 61 | IB (PP) | Large ribosomal subunit protein uL23m | polymer | 263 | 30616.2 | 1 | Pfam (PF00276) UniProt (by SIFTS) (P32387) | Saccharomyces cerevisiae W303 (brewer's yeast) | |
| 62 | JB (QQ) | Large ribosomal subunit protein uL24m | polymer | 297 | 33808.0 | 1 | UniProt (P36534) Pfam (PF00467) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L40,mitochondrial,YmL40 |
| 63 | KB (RR) | Large ribosomal subunit protein bL27m | polymer | 371 | 43310.7 | 1 | UniProt (P12687) Pfam (PF01016) Pfam (PF18471) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L2,mitochondrial,YMR6,YmL2 |
| 64 | LB (SS) | Large ribosomal subunit protein bL28m | polymer | 258 | 30109.3 | 1 | UniProt (P36525) Pfam (PF00830) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L24,mitochondrial,YmL14/YmL24 |
| 65 | MB (TT) | Large ribosomal subunit protein uL29m | polymer | 319 | 37019.9 | 1 | UniProt (P36517) Pfam (PF06984) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L4,mitochondrial,YmL4 |
| 66 | NB (UU) | Large ribosomal subunit protein uL30m | polymer | 86 | 9549.3 | 1 | UniProt (P20084) Pfam (PF00327) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L33,mitochondrial,YmL33 |
| 67 | OB (V) | Small ribosomal subunit protein mS26 | polymer | 318 | 36059.3 | 1 | UniProt (P17558) Pfam (PF26163) | Saccharomyces cerevisiae W303 | 37S ribosomal protein PET123,mitochondrial |
| 68 | PB (VV) | Large ribosomal subunit protein bL31m | polymer | 177 | 20125.8 | 1 | UniProt (P36531) Pfam (PF21492) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L36,mitochondrial,YmL36 |
| 69 | QB (WW) | Large ribosomal subunit protein bL32m | polymer | 183 | 21483.1 | 1 | UniProt (P25348) Pfam (PF01783) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L32,mitochondrial,YmL32 |
| 70 | RB (XX) | Large ribosomal subunit protein bL33m | polymer | 70 | 7992.6 | 1 | UniProt (P36533) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L39,mitochondrial,YmL39 |
| 71 | SB (YY) | Large ribosomal subunit protein bL34m | polymer | 105 | 12054.3 | 1 | UniProt (Q04598) Pfam (PF00468) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L34,mitochondrial,L34mt |
| 72 | TB (ZZ) | Large ribosomal subunit protein bL35m | polymer | 115 | 13276.7 | 1 | UniProt (P53921) Pfam (PF01632) | Saccharomyces cerevisiae W303 | 54S ribosomal protein MRP35 |
| 73 | UB (aa) | Large ribosomal subunit protein mL58 | polymer | 195 | 22431.9 | 1 | UniProt (P22354) Pfam (PF12824) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L20,mitochondrial,YmL20 |
| 74 | VB (bb) | Large ribosomal subunit protein mL59 | polymer | 157 | 18627.0 | 1 | UniProt (P23369) Pfam (PF18126) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L25,mitochondrial,YmL25 |
| 75 | WB (cc) | Large ribosomal subunit protein mL60 | polymer | 131 | 15555.5 | 1 | UniProt (P14063) Pfam (PF09784) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L31,mitochondrial,YmL31 |
| 76 | XB (dd) | Large ribosomal subunit protein mL67 | polymer | 226 | 26937.8 | 1 | UniProt (Q06630) Pfam (PF12829) | Saccharomyces cerevisiae W303 | Cross-linked transcription component 1,Mitochondrial homologous recombination protein 1 |
| 77 | YB (r) | 15S mitochondrial rRNA | polymer | 1649 | 528784.1 | 1 | Saccharomyces cerevisiae W303 | ||
| 78 | AC, AD, AE, AF, AG... (B, AA, r, E, K...) | MAGNESIUM ION | non-polymer | 24.3 | 317 | Chemie (MG) PubChem (888) | |||
| 79 | GC (W) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) |
Sequence modifications
M: 1 - 143 (UniProt: P53937)
| PDB | External Database | Details |
|---|---|---|
| Leu 41 | Phe 41 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 77 |
| Total formula weight | 3634367.7 | |
| Non-Polymers* | Number of molecules | 318 |
| Total formula weight | 8227.9 | |
| All* | Total formula weight | 3642595.6 |
