9HM0
Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Small ribosomal subunit protein mS38 | polymer | 111 | 12800.4 | 1 | UniProt (P32344) Pfam (PF08213) | Saccharomyces cerevisiae W303 | Mitochondrial mRNA-processing protein COX24 |
| 2 | B (2) | Small ribosomal subunit protein mS41 | polymer | 130 | 15321.7 | 1 | UniProt (P38783) Pfam (PF09597) | Saccharomyces cerevisiae W303 | Function required for yeast viability protein 4,Protein FYV4,mitochondrial |
| 3 | C (3) | Small ribosomal subunit protein mS42 | polymer | 266 | 30257.4 | 1 | UniProt (P47141) Pfam (PF02777) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S26,mitochondrial |
| 4 | D (4) | Small ribosomal subunit protein mS43 | polymer | 321 | 36775.8 | 1 | UniProt (P10662) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP1,mitochondrial |
| 5 | E (5) | Small ribosomal subunit protein mS27 | polymer | 339 | 39045.0 | 1 | UniProt (P12686) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP13,mitochondrial,Small ribosomal subunit protein mS44,YmS-A |
| 6 | F (6) | Small ribosomal subunit protein mS45 | polymer | 345 | 39638.2 | 1 | UniProt (P53292) Pfam (PF12298) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S35,mitochondrial |
| 7 | G (7) | Small ribosomal subunit protein mS46 | polymer | 361 | 41282.0 | 1 | UniProt (Q03430) | Saccharomyces cerevisiae W303 | 37S ribosomal protein RSM28,mitochondrial |
| 8 | H (8) | Small ribosomal subunit protein mS47 | polymer | 500 | 56351.2 | 1 | UniProt (P28817) Pfam (PF16113) | Saccharomyces cerevisiae W303 | 3-hydroxyisobutyryl-CoA hydrolase,mitochondrial,3-hydroxyisobutyryl-coenzyme A hydrolase,HIB-CoA hydrolase,HIBYL-CoA-H |
| 9 | I (A) | Small ribosomal subunit protein bS1m | polymer | 344 | 39507.5 | 1 | UniProt (Q02950) Pfam (PF11709) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP51,mitochondrial |
| 10 | J (B) | Small ribosomal subunit protein uS2m | polymer | 394 | 44205.7 | 1 | UniProt (P32902) Pfam (PF00318) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP4,mitochondrial |
| 11 | K (C) | Small ribosomal subunit protein uS3m | polymer | 398 | 47171.0 | 1 | UniProt (P02381) Pfam (PF05316) | Saccharomyces cerevisiae W303 | Ribosomal protein VAR1,mitochondrial |
| 12 | L (D) | Small ribosomal subunit protein uS4m | polymer | 486 | 56450.9 | 1 | UniProt (P27929) Pfam (PF01479) | Saccharomyces cerevisiae W303 | 37S ribosomal protein NAM9,mitochondrial,Nuclear accommodation of mitochondria protein 9 |
| 13 | M (E) | Small ribosomal subunit protein uS5m | polymer | 307 | 34941.1 | 1 | UniProt (P33759) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S5,mitochondrial |
| 14 | N (F) | Small ribosomal subunit protein bS6m | polymer | 131 | 15046.7 | 1 | UniProt (P28778) Pfam (PF01250) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP17,mitochondrial,YmS16 |
| 15 | O (G) | Small ribosomal subunit protein uS7m | polymer | 247 | 27857.1 | 1 | UniProt (P47150) Pfam (PF00177) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S7,mitochondrial |
| 16 | P (H) | Small ribosomal subunit protein uS8m | polymer | 155 | 17496.6 | 1 | UniProt (Q03799) Pfam (PF00410) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S8,mitochondrial |
| 17 | Q (I) | Small ribosomal subunit protein uS9m | polymer | 278 | 31980.3 | 1 | UniProt (P38120) Pfam (PF00380) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S9,mitochondrial |
| 18 | R (J) | Small ribosomal subunit protein uS10m | polymer | 203 | 23458.9 | 1 | UniProt (Q03201) Pfam (PF00338) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S10,mitochondrial |
| 19 | S (K) | Small ribosomal subunit protein uS11m | polymer | 217 | 24603.4 | 1 | UniProt (P42847) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S18,mitochondrial,YmS18 |
| 20 | T (L) | Small ribosomal subunit protein uS12m | polymer | 153 | 16948.7 | 1 | UniProt (P53732) Pfam (PF00164) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S12,mitochondrial |
| 21 | U (M) | Small ribosomal subunit protein uS13m | polymer | 143 | 16087.0 | 1 | UniProt (P53937) Pfam (PF00416) | Saccharomyces cerevisiae W303 | 37S ribosomal protein SWS2,mitochondrial,Sick without securin protein 2 |
| 22 | V (N) | Small ribosomal subunit protein uS14m | polymer | 115 | 13563.1 | 1 | UniProt (P10663) Pfam (PF00253) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP2,mitochondrial |
| 23 | W (O) | Small ribosomal subunit protein uS15m | polymer | 286 | 33116.4 | 1 | UniProt (P21771) Pfam (PF00312) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S28,mitochondrial |
| 24 | X (P) | Small ribosomal subunit protein bS16m | polymer | 121 | 13663.0 | 1 | UniProt (Q02608) Pfam (PF00886) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S16,mitochondrial |
| 25 | Y (Q) | Small ribosomal subunit protein uS17m | polymer | 237 | 27684.0 | 1 | UniProt (Q03246) Pfam (PF00366) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S17,mitochondrial |
| 26 | Z (R) | Small ribosomal subunit protein bS18m | polymer | 138 | 15866.5 | 1 | UniProt (P40033) Pfam (PF01084) | Saccharomyces cerevisiae W303 | 37S ribosomal protein RSM18,mitochondrial |
| 27 | AA (S) | Small ribosomal subunit protein uS19m | polymer | 91 | 10292.0 | 1 | UniProt (P53733) Pfam (PF00203) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S19,mitochondrial |
| 28 | BA (T) | Small ribosomal subunit protein bS21m | polymer | 177 | 20432.7 | 1 | UniProt (P38175) Pfam (PF01165) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP21,mitochondrial |
| 29 | CA (U) | Small ribosomal subunit protein mS23 | polymer | 264 | 30554.4 | 1 | UniProt (P40496) Pfam (PF13741) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S25,mitochondrial |
| 30 | DA (W) | Small ribosomal subunit protein mS29 | polymer | 450 | 50940.7 | 1 | UniProt (Q01163) Pfam (PF10236) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S23,mitochondrial,DAP-3 |
| 31 | EA (X) | Small ribosomal subunit protein mS33 | polymer | 110 | 12420.7 | 1 | UniProt (P53305) Pfam (PF08293) | Saccharomyces cerevisiae W303 | Mitochondrial 37S ribosomal protein S27 |
| 32 | FA (Y) | Small ribosomal subunit protein mS35 | polymer | 319 | 37458.5 | 1 | UniProt (Q03976) Pfam (PF10213) | Saccharomyces cerevisiae W303 | 37S ribosomal protein S24,mitochondrial,Mitochondrial ribosomal small subunit protein 24 |
| 33 | GA (Z) | Small ribosomal subunit protein mS37 | polymer | 95 | 10709.6 | 1 | UniProt (O75012) Pfam (PF06747) | Saccharomyces cerevisiae W303 | 37S ribosomal protein MRP10,mitochondrial,YmS-T |
| 34 | HA (a) | ATPase expression protein 3 | polymer | 606 | 70425.1 | 1 | UniProt (Q12089) Pfam (PF13812) | Saccharomyces cerevisiae W303 | |
| 35 | IA (t) | E/E-site formyl-methionine tRNA | polymer | 76 | 24234.3 | 1 | Saccharomyces cerevisiae W303 | ||
| 36 | JA (00) | Large ribosomal subunit protein bL36m | polymer | 93 | 10719.0 | 1 | UniProt (O14464) Pfam (PF00444) | Saccharomyces cerevisiae W303 | 54S ribosomal protein RTC6,mitochondrial,Restriction of telomere capping protein 6,Translation associated element 4 |
| 37 | KA (11) | Large ribosomal subunit protein mL38 | polymer | 367 | 42886.1 | 1 | UniProt (Q06678) Pfam (PF01161) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L35,mitochondrial,YmL35 |
| 38 | LA (22) | Large ribosomal subunit protein mL40 | polymer | 147 | 17373.3 | 1 | UniProt (P36527) Pfam (PF09812) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L28,mitochondrial,YmL28 |
| 39 | MA (33) | Large ribosomal subunit protein mL41 | polymer | 146 | 16521.1 | 1 | UniProt (P36526) Pfam (PF09809) | Saccharomyces cerevisiae (brewer's yeast) | 54S ribosomal protein L27,mitochondrial,YmL27 |
| 40 | NA (44) | Large ribosomal subunit protein mL43 | polymer | 140 | 16153.7 | 1 | UniProt (Q06090) Pfam (PF05047) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L51,mitochondrial |
| 41 | OA (55) | Large ribosomal subunit protein mL44 | polymer | 390 | 44058.7 | 1 | UniProt (P36516) Pfam (PF00035) Pfam (PF00636) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L3,mitochondrial,YmL3 |
| 42 | PA (66) | Large ribosomal subunit protein mL46 | polymer | 281 | 32261.7 | 1 | UniProt (P36528) Pfam (PF11788) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L17,mitochondrial,YmL17/YmL30 |
| 43 | QA (77) | Large ribosomal subunit protein mL49 | polymer | 146 | 16406.2 | 1 | UniProt (P25642) Pfam (PF05046) | Saccharomyces cerevisiae W303 | 54S ribosomal protein IMG2,mitochondrial,Integrity of mitochondrial genome protein 2 |
| 44 | RA (88) | Large ribosomal subunit protein mL50 | polymer | 264 | 30317.4 | 1 | UniProt (Q02204) Pfam (PF10501) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L13,mitochondrial,YmL13 |
| 45 | SA (99) | Large ribosomal subunit protein mL57 | polymer | 253 | 28206.5 | 1 | UniProt (P36523) Pfam (PF00636) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L15,mitochondrial,YmL15 |
| 46 | TA (AA) | 21S mitochondrial rRNA | polymer | 3296 | 1057805.4 | 1 | Saccharomyces cerevisiae W303 | ||
| 47 | UA (BB) | Large ribosomal subunit protein uL2m | polymer | 393 | 43870.0 | 1 | UniProt (P32611) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae W303 | 54S ribosomal protein RML2,mitochondrial,L2 |
| 48 | VA (CC) | Large ribosomal subunit protein uL3m | polymer | 269 | 29843.5 | 1 | UniProt (P31334) Pfam (PF00297) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L9,mitochondrial,YmL9 |
| 49 | WA (DD) | Large ribosomal subunit protein uL4m | polymer | 286 | 32014.6 | 1 | UniProt (P51998) Pfam (PF00573) | Saccharomyces cerevisiae W303 | 54S ribosomal protein YmL6,mitochondrial |
| 50 | XA (EE) | Large ribosomal subunit protein uL5m | polymer | 292 | 33152.0 | 1 | UniProt (P36519) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L7,mitochondrial,YmL5,YmL7 |
| 51 | YA (FF) | Large ribosomal subunit protein uL6m | polymer | 214 | 23926.9 | 1 | UniProt (P32904) Pfam (PF00347) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L6,mitochondrial,YmL16 |
| 52 | ZA (GG) | Large ribosomal subunit protein bL9m | polymer | 139 | 16313.8 | 1 | UniProt (P53724) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L50,mitochondrial |
| 53 | AB (HH) | Large ribosomal subunit protein uL13m | polymer | 163 | 18499.5 | 1 | UniProt (Q12487) Pfam (PF00572) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L23,mitochondrial,YmL23 |
| 54 | BB (II) | Large ribosomal subunit protein uL14m | polymer | 138 | 14929.7 | 1 | UniProt (P35996) Pfam (PF00238) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L38,mitochondrial,YmL38 |
| 55 | CB (JJ) | Large ribosomal subunit protein uL15m | polymer | 322 | 36414.5 | 1 | UniProt (P36520) Pfam (PF00828) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L10,mitochondrial,YmL10/YmL18 |
| 56 | DB (KK) | Large ribosomal subunit protein uL16m | polymer | 232 | 26569.0 | 1 | UniProt (P38064) Pfam (PF00252) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L16,mitochondrial,YmL47 |
| 57 | EB (LL) | Large ribosomal subunit protein bL17m | polymer | 238 | 26989.4 | 1 | UniProt (P22353) Pfam (PF01196) Pfam (PF18502) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L8,mitochondrial,YmL8 |
| 58 | FB (MM) | Large ribosomal subunit protein bL19m | polymer | 169 | 19428.8 | 1 | UniProt (P25626) Pfam (PF01245) | Saccharomyces cerevisiae W303 | 54S ribosomal protein IMG1,mitochondrial,Integrity of mitochondrial genome protein 1,PetCR46 |
| 59 | GB (NN) | Large ribosomal subunit protein bL21m | polymer | 161 | 18420.5 | 1 | UniProt (P40858) Pfam (PF00829) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L49,mitochondrial,YmL49 |
| 60 | HB (OO) | Large ribosomal subunit protein uL22m | polymer | 309 | 34957.4 | 1 | UniProt (P53881) Pfam (PF00237) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L22,mitochondrial |
| 61 | IB (PP) | Large ribosomal subunit protein uL23m | polymer | 263 | 30616.2 | 1 | Saccharomyces cerevisiae W303 (brewer's yeast) | ||
| 62 | JB (QQ) | Large ribosomal subunit protein uL24m | polymer | 297 | 33808.0 | 1 | UniProt (P36534) Pfam (PF22682) Pfam (PF00467) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L40,mitochondrial,YmL40 |
| 63 | KB (RR) | Large ribosomal subunit protein bL27m | polymer | 371 | 43310.7 | 1 | UniProt (P12687) Pfam (PF01016) Pfam (PF18471) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L2,mitochondrial,YMR6,YmL2 |
| 64 | LB (SS) | Large ribosomal subunit protein bL28m | polymer | 258 | 30109.3 | 1 | UniProt (P36525) Pfam (PF00830) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L24,mitochondrial,YmL14/YmL24 |
| 65 | MB (TT) | Large ribosomal subunit protein uL29m | polymer | 319 | 37019.9 | 1 | UniProt (P36517) Pfam (PF06984) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L4,mitochondrial,YmL4 |
| 66 | NB (UU) | Large ribosomal subunit protein uL30m | polymer | 86 | 9549.3 | 1 | UniProt (P20084) Pfam (PF00327) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L33,mitochondrial,YmL33 |
| 67 | OB (V) | Small ribosomal subunit protein mS26 | polymer | 318 | 36059.3 | 1 | UniProt (P17558) | Saccharomyces cerevisiae W303 | 37S ribosomal protein PET123,mitochondrial |
| 68 | PB (VV) | Large ribosomal subunit protein bL31m | polymer | 177 | 20125.8 | 1 | UniProt (P36531) Pfam (PF21492) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L36,mitochondrial,YmL36 |
| 69 | QB (WW) | Large ribosomal subunit protein bL32m | polymer | 183 | 21483.1 | 1 | UniProt (P25348) Pfam (PF01783) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L32,mitochondrial,YmL32 |
| 70 | RB (XX) | Large ribosomal subunit protein bL33m | polymer | 70 | 7992.6 | 1 | UniProt (P36533) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L39,mitochondrial,YmL39 |
| 71 | SB (YY) | Large ribosomal subunit protein bL34m | polymer | 105 | 12054.3 | 1 | UniProt (Q04598) Pfam (PF00468) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L34,mitochondrial,L34mt |
| 72 | TB (ZZ) | Large ribosomal subunit protein bL35m | polymer | 115 | 13276.7 | 1 | UniProt (P53921) Pfam (PF01632) | Saccharomyces cerevisiae W303 | 54S ribosomal protein MRP35 |
| 73 | UB (aa) | Large ribosomal subunit protein mL58 | polymer | 195 | 22431.9 | 1 | UniProt (P22354) Pfam (PF12824) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L20,mitochondrial,YmL20 |
| 74 | VB (bb) | Large ribosomal subunit protein mL59 | polymer | 157 | 18627.0 | 1 | UniProt (P23369) Pfam (PF18126) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L25,mitochondrial,YmL25 |
| 75 | WB (cc) | Large ribosomal subunit protein mL60 | polymer | 131 | 15555.5 | 1 | UniProt (P14063) Pfam (PF09784) | Saccharomyces cerevisiae W303 | 54S ribosomal protein L31,mitochondrial,YmL31 |
| 76 | XB (dd) | Large ribosomal subunit protein mL67 | polymer | 226 | 26937.8 | 1 | UniProt (Q06630) Pfam (PF12829) | Saccharomyces cerevisiae W303 | Cross-linked transcription component 1,Mitochondrial homologous recombination protein 1 |
| 77 | YB (r) | 15S mitochondrial rRNA | polymer | 1649 | 528784.1 | 1 | Saccharomyces cerevisiae W303 | ||
| 78 | AC, AD, AE, AF, AG... (B, AA, r, E, K...) | MAGNESIUM ION | non-polymer | 24.3 | 317 | Chemie (MG) | |||
| 79 | GC (W) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) |
Sequence modifications
M: 1 - 143 (UniProt: P53937)
| PDB | External Database | Details |
|---|---|---|
| Leu 41 | Phe 41 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 77 |
| Total formula weight | 3634367.7 | |
| Non-Polymers* | Number of molecules | 318 |
| Total formula weight | 8227.9 | |
| All* | Total formula weight | 3642595.6 |
