9HDM
Crystal structure of Pyrimidine Nucleoside 2'-Hydroxylase (PDN2'H) from Neurospora crassa in complex with thymidine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Clavaminate synthase-like protein | polymer | 390 | 42508.7 | 2 | UniProt (Q7SHQ5) | Neurospora crassa | |
| 2 | C, F (A, B) | MANGANESE (II) ION | non-polymer | 54.9 | 2 | Chemie (MN) PubChem (27854) | |||
| 3 | D, H (A, B) | THYMIDINE | non-polymer | 242.2 | 2 | Chemie (THM) PubChem (1134) PubChem (5789) PubChem (44381956) PubChem (72247) PubChem (46782983) PubChem (159269) PubChem (57543820) PubChem (57548467) PubChem (58445182) PubChem (59119194) PubChem (68231510) PubChem (68441874) PubChem (68642271) PubChem (68642272) PubChem (448456) PubChem (451756) PubChem (453555) PubChem (489518) PubChem (638041) PubChem (3000346) PubChem (5270603) PubChem (7048808) PubChem (121354259) PubChem (142978968) PubChem (144640942) PubChem (163655970) | |||
| 4 | E (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 5 | G (B) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) PubChem (312) | |||
| 6 | I (B) | (R,R)-2,3-BUTANEDIOL | non-polymer | 90.1 | 1 | Chemie (BU3) | |||
| 7 | J, K (A, B) | water | water | 18.0 | 654 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 370 (UniProt: Q7SHQ5)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | initiating methionine |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Ser -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 85017.3 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 782.0 | |
| All* | Total formula weight | 85799.3 |
