9HD7
Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, I, L, U... (1, 4, 11, 14, G...) | Chlorophyll a-b binding protein Lhcbm-I | polymer | 249 | 26744.3 | 6 | Chlorella ohadii | Chlorophyll a-b binding protein Lhcbm-I | |
| 2 | B, BA, BB, E, J... (2, 5, 12, 15, N...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 247 | 26604.2 | 6 | UniProt (A0AAD5DLH1) | Chlorella ohadii | Chlorophyll a-b binding protein Lhcbm-II |
| 3 | C, F (3, 6) | Chlorophyll a-b binding protein, chloroplastic | polymer | 259 | 27506.3 | 2 | UniProt (A0AAD5DXI2) | Chlorella ohadii | Chlorophyll a-b binding protein Lhcbm-IV |
| 4 | G, H (7, 8) | Chloroplast photosystem II 10 kDa protein | polymer | 140 | 14953.1 | 2 | UniProt (A0A5P4NAS4) Pfam (PF04725) | Chlorella ohadii | |
| 5 | K, N (13, 16) | Chlorophyll a-b binding protein, chloroplastic | polymer | 243 | 26169.7 | 2 | UniProt (A0AAD5H446) | Chlorella ohadii | Chlorophyll a-b binding protein Lhcbm-V |
| 6 | O, OA (A, a) | Photosystem II protein D1 | polymer | 353 | 39040.4 | 2 | UniProt (W8SIR2) Pfam (PF00124) | Chlorella ohadii | PSII D1 protein,Photosystem II Q(B) protein |
| 7 | P, PA (B, b) | Photosystem II CP47 reaction center protein | polymer | 508 | 56199.8 | 2 | UniProt (W8TIK4) Pfam (PF00421) | Chlorella ohadii | PSII 47 kDa protein,Protein CP-47 |
| 8 | Q, QA (C, c) | Photosystem II CP43 reaction center protein | polymer | 473 | 52106.5 | 2 | UniProt (A0A076EAP1) Pfam (PF00421) | Chlorella ohadii | PSII 43 kDa protein,Protein CP-43 |
| 9 | R, RA (D, d) | Photosystem II D2 protein | polymer | 352 | 39534.2 | 2 | UniProt (W8SYD4) Pfam (PF00124) | Chlorella ohadii | PSII D2 protein,Photosystem Q(A) protein |
| 10 | S, SA (E, e) | Cytochrome b559 subunit alpha | polymer | 83 | 9449.6 | 2 | UniProt (W8SU91) Pfam (PF00283) Pfam (PF00284) | Chlorella ohadii | PSII reaction center subunit V |
| 11 | T, TA (F, f) | Cytochrome b559 subunit beta | polymer | 41 | 4722.6 | 2 | UniProt (W8SIQ3) Pfam (PF00283) | Chlorella ohadii | PSII reaction center subunit VI |
| 12 | V, VA (H, h) | Photosystem II reaction center protein H | polymer | 80 | 8576.0 | 2 | UniProt (W8SIT0) Pfam (PF00737) | Chlorella ohadii | PSII-H |
| 13 | W, WA (I, i) | Photosystem II reaction center protein I | polymer | 38 | 4386.1 | 2 | UniProt (A0A5P4ND48) Pfam (PF02532) | Chlorella ohadii | PSII-I,PSII 4.8 kDa protein |
| 14 | X, XA (J, j) | Photosystem II reaction center protein J | polymer | 42 | 4246.9 | 2 | UniProt (W8TIH6) Pfam (PF01788) | Chlorella ohadii | PSII-J |
| 15 | Y, YA (K, k) | Photosystem II reaction center protein K | polymer | 42 | 4681.7 | 2 | UniProt (P56348) Pfam (PF02533) | Chlorella ohadii | PSII-K |
| 16 | Z, ZA (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4391.2 | 2 | UniProt (P56339) Pfam (PF02419) | Chlorella ohadii | PSII-L |
| 17 | AA, AB (M, m) | Photosystem II reaction center protein M | polymer | 34 | 3751.5 | 2 | UniProt (A0A5P4NAV9) Pfam (PF05151) | Chlorella ohadii | PSII-M |
| 18 | CA, CB (O, o) | Chloroplast oxygen-evolving enhancer protein 1b (PsbO) | polymer | 305 | 31559.6 | 2 | Chlorella ohadii | ||
| 19 | DA, DB (P, p) | PWWP domain-containing protein | polymer | 915 | 94779.1 | 2 | UniProt (A0AAD5H4X0) | Chlorella ohadii | |
| 20 | EA, EB (Q, q) | Chloroplast oxygen-evolving enhancer protein 3 | polymer | 203 | 21618.6 | 2 | UniProt (A0A5P4NB29) Pfam (PF05757) | Chlorella ohadii | |
| 21 | FA, FB (R, r) | Chlorophyll a-b binding protein, chloroplastic | polymer | 297 | 31706.7 | 2 | UniProt (A0AAD5E2W2) | Chlorella ohadii | |
| 22 | GA, GB (S, s) | Chlorophyll a-b binding protein, chloroplastic | polymer | 293 | 30853.1 | 2 | Chlorella ohadii | ||
| 23 | HA, HB (T, t) | Photosystem II reaction center protein T | polymer | 31 | 3605.4 | 2 | UniProt (P56327) Pfam (PF01405) | Chlorella ohadii | PSII-T |
| 24 | IA, IB (U, u) | Chloroplast PsbY | polymer | 367 | 36784.4 | 2 | UniProt (A0A5P4NEE0) | Chlorella ohadii | |
| 25 | JA, JB (V, v) | Photosystem II reaction center protein Psb30 | polymer | 33 | 3450.2 | 2 | UniProt (A0A076EAR3) Pfam (PF05969) | Chlorella ohadii | Photosystem II reaction center protein Ycf12 |
| 26 | KA, KB (W, w) | PSII 6.1 kDa protein | polymer | 447 | 49142.0 | 2 | UniProt (A0AAD5DZE4) | Chlorella ohadii | |
| 27 | LA, LB (X, x) | Photosystem II reaction center protein X (PsbX) | polymer | 100 | 9831.4 | 2 | UniProt (A0AAD5H2N2) | Chlorella ohadii | |
| 28 | MA, MB (Y, y) | Chlorophyll a-b binding protein, chloroplastic | polymer | 256 | 27530.3 | 2 | UniProt (A0AAD5DNU0) | Chlorella ohadii | Chlorophyll a-b binding protein Lhcbm-III |
| 29 | NA, NB (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6727.1 | 2 | UniProt (W8SKL0) Pfam (PF01737) | Chlorella ohadii | |
| 30 | AF, AG, AQ, AR, BD... (6, 11, S, Y, 3...) | CHLOROPHYLL B | non-polymer | 907.5 | 120 | Chemie (CHL) | |||
| 31 | AC, AD, AE, AH, AI... (1, 3, 4, 12, 14...) | CHLOROPHYLL A | non-polymer | 893.5 | 264 | Chemie (CLA) | |||
| 32 | BS, BX, CC, CO, CS... (a, r, 1, L, g...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 48 | Chemie (LHG) | |||
| 33 | CH, DC, DH, DV, EC... (12, 1, g, 15, n...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 42 | Chemie (LUT) | |||
| 34 | AZ, EH, FC, FV, GJ... (y, 12, 1, g, 15...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 22 | Chemie (NEX) | |||
| 35 | AX, GV, NP, OG, QI... (r, g, R, 11, 14...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 8 | Chemie (XAT) | |||
| 36 | IL, ML, NQ, UF, VF... (B, T, 7, 8, b) | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE | non-polymer | 705.0 | 6 | Chemie (3PH) | |||
| 37 | AK, QR (A, a) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 38 | EK, NM, TR, UR (A, D, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 39 | BM, CM, EU, FL, GK... (C, d, B, A, h...) | BETA-CAROTENE | non-polymer | 536.9 | 20 | Chemie (BCR) | |||
| 40 | BO, HK, KU, MU, NV... (L, A, d, l, D...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) | |||
| 41 | AO, AY, GM, IK, IM... (K, w, C, A, S...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 22 | Chemie (LMG) | |||
| 42 | FU, JK, SM, YR (d, A, D, a) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 43 | AS, BZ, CY, DX, DY... (a, y, w, r, x...) | ALPHA-LINOLENIC ACID | non-polymer | 278.4 | 22 | Chemie (LNL) | |||
| 44 | LL, YS (B, b) | STEARIC ACID | non-polymer | 284.5 | 2 | Chemie (STE) | |||
| 45 | AT, NL (c, C) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 46 | BY, DM, EM, FM, OQ... (w, C, W, c) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) | |||
| 47 | MM, ZT (D, d) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
| 48 | BU, OM (d, D) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
| 49 | AN, OU (F, f) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 50 | HW, VO (n, N) | PALMITOLEIC ACID | non-polymer | 254.4 | 2 | Chemie (PAM) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 66 |
| Total formula weight | 1614697.7 | |
| Non-Polymers* | Number of molecules | 612 |
| Total formula weight | 483541.3 | |
| All* | Total formula weight | 2098239.0 |
