9H91
Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L32 | polymer | 56 | 6314.2 | 1 | UniProt (A0AAN0Y2T2) | Vibrio natriegens | |
| 2 | B (1) | 50S ribosomal protein L33 | polymer | 56 | 6540.8 | 1 | UniProt (A0AAN0XZW0) | Vibrio natriegens | |
| 3 | C (2) | 50S ribosomal protein L34 | polymer | 44 | 5198.3 | 1 | UniProt (A0AAN0Y4Q5) | Vibrio natriegens | |
| 4 | D (3) | 50S ribosomal protein L35 | polymer | 64 | 7325.0 | 1 | UniProt (A0AAN0Y2A7) | Vibrio natriegens | |
| 5 | E (4) | 50S ribosomal protein L36 | polymer | 37 | 4291.3 | 1 | UniProt (A0AAN0Y149) | Vibrio natriegens | |
| 6 | F (9) | Cathelicidin-2 | polymer | 17 | 2167.6 | 1 | UniProt (P19660) | Bos taurus | Bactenecin-5,Bac5,PR-42, Bactenecin-5 (1-17) , Bac5 (1-17). |
| 7 | G (B) | 5S ribosomal RNA | polymer | 121 | 38990.2 | 1 | Vibrio natriegens | ||
| 8 | H (C) | 50S ribosomal protein L2 | polymer | 274 | 30059.7 | 1 | UniProt (A0AAN1CUJ7) | Vibrio natriegens | |
| 9 | I (D) | 50S ribosomal protein L3 | polymer | 209 | 22393.6 | 1 | UniProt (A0AAN1CUL8) | Vibrio natriegens | |
| 10 | J (E) | 50S ribosomal protein L4 | polymer | 200 | 21906.2 | 1 | UniProt (A0AAN1CVG6) | Vibrio natriegens | |
| 11 | K (G) | 50S ribosomal protein L6 | polymer | 177 | 18801.6 | 1 | UniProt (A0AAN1CUM2) | Vibrio natriegens | |
| 12 | L (H) | Large ribosomal subunit protein bL9 | polymer | 150 | 15769.9 | 1 | UniProt (A0AAN0Y4G6) | Vibrio natriegens | |
| 13 | M (J) | 50S ribosomal protein L13 | polymer | 142 | 15990.6 | 1 | UniProt (A0AAN0Y0U3) | Vibrio natriegens | |
| 14 | N (K) | 50S ribosomal protein L14 | polymer | 123 | 13594.1 | 1 | UniProt (A0AAN0Y0F6) | Vibrio natriegens | |
| 15 | O (L) | 50S ribosomal protein L15 | polymer | 144 | 14878.4 | 1 | UniProt (A0AAN1CUX1) | Vibrio natriegens | |
| 16 | P (M) | 50S ribosomal protein L16 | polymer | 136 | 15557.4 | 1 | UniProt (A0AAN0Y0C5) | Vibrio natriegens | |
| 17 | Q (N) | 50S ribosomal protein L17 | polymer | 126 | 14231.5 | 1 | UniProt (A0AAN0Y071) | Vibrio natriegens | |
| 18 | R (O) | 50S ribosomal protein L18 | polymer | 117 | 12641.6 | 1 | UniProt (A0AAN1CVH0) | Vibrio natriegens | |
| 19 | S (P) | 50S ribosomal protein L19 | polymer | 117 | 13305.5 | 1 | UniProt (A0AAN1CWW0) | Vibrio natriegens | |
| 20 | T (Q) | 50S ribosomal protein L20 | polymer | 117 | 13414.8 | 1 | UniProt (A0AAN1CVB0) | Vibrio natriegens | |
| 21 | U (R) | 50S ribosomal protein L21 | polymer | 103 | 11544.3 | 1 | UniProt (A0AAN1CVI2) | Vibrio natriegens | |
| 22 | V (S) | 50S ribosomal protein L22 | polymer | 110 | 12181.1 | 1 | UniProt (A0AAN0Y0L0) | Vibrio natriegens | |
| 23 | W (T) | 50S ribosomal protein L23 | polymer | 100 | 11151.1 | 1 | UniProt (A0AAN1CUR9) | Vibrio natriegens | |
| 24 | X (U) | 50S ribosomal protein L24 | polymer | 105 | 11239.0 | 1 | UniProt (A0AAN0Y061) | Vibrio natriegens | |
| 25 | Y (V) | 50S ribosomal protein L25 | polymer | 92 | 10391.0 | 1 | UniProt (A0AAN0Y4S6) | Vibrio natriegens | |
| 26 | Z (W) | 50S ribosomal protein L27 | polymer | 85 | 9228.6 | 1 | UniProt (A0AAN1CUT7) | Vibrio natriegens | |
| 27 | AA (X) | 50S ribosomal protein L28 | polymer | 78 | 9056.6 | 1 | UniProt (A0AAN0Y076) | Vibrio natriegens | |
| 28 | BA (Y) | 50S ribosomal protein L29 | polymer | 63 | 7205.3 | 1 | UniProt (A0AAN0XZZ8) | Vibrio natriegens | |
| 29 | CA (Z) | 50S ribosomal protein L30 | polymer | 58 | 6596.9 | 1 | UniProt (A0AAN1CUK2) | Vibrio natriegens | |
| 30 | DA (A) | 23S ribosomal RNA | polymer | 2721 | 881521.3 | 1 | Vibrio natriegens | ||
| 31 | EA (4) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 32 | FA, GA (9, A) | water | water | 18.0 | 18 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 30 |
| Total formula weight | 1263487.5 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 1263553.0 |
