9H6Y
Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | Initiator methionylated tRNA | polymer | 76 | 24721.8 | 1 | Oryctolagus cuniculus | ||
| 2 | B (2) | 18S ribosomal RNA | polymer | 1863 | 601015.7 | 1 | Oryctolagus cuniculus | ||
| 3 | C (3) | Linear mRNA | polymer | 160 | 51665.8 | 1 | Oryctolagus cuniculus | ||
| 4 | D (A) | Eukaryotic translation initiation factor 2 subunit 1 | polymer | 284 | 32792.9 | 1 | UniProt (G1T2G4) Pfam (PF00575) Pfam (PF07541) | Oryctolagus cuniculus (rabbit) | Eukaryotic translation initiation factor 2 subunit alpha |
| 5 | E (B) | Eukaryotic translation initiation factor 2 subunit 3 | polymer | 485 | 52500.0 | 1 | Pfam (PF00009) Pfam (PF03144) Pfam (PF09173) UniProt (by SIFTS) (P81795) | Oryctolagus cuniculus | |
| 6 | F (C) | Small ribosomal subunit protein uS2 | polymer | 295 | 32928.0 | 1 | UniProt (G1TLT8) Pfam (PF00318) Pfam (PF16122) | Oryctolagus cuniculus (rabbit) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40 |
| 7 | G (D) | Small ribosomal subunit protein eS1 | polymer | 264 | 29929.0 | 1 | UniProt (G1TN72) Pfam (PF01015) | Oryctolagus cuniculus (rabbit) | |
| 8 | H (E) | Small ribosomal subunit protein uS5 | polymer | 270 | 29100.0 | 1 | UniProt (A0AAA9WW19) Pfam (PF00333) Pfam (PF03719) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S2 |
| 9 | I (F) | Small ribosomal subunit protein uS3 | polymer | 243 | 26715.3 | 1 | UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189) | Oryctolagus cuniculus (rabbit) | |
| 10 | J (G) | Small ribosomal subunit protein eS4 | polymer | 263 | 29658.9 | 1 | UniProt (G1TK17) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Oryctolagus cuniculus (rabbit) | |
| 11 | K (H) | Small ribosomal subunit protein uS7 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Oryctolagus cuniculus (rabbit) | |
| 12 | L (I) | Small ribosomal subunit protein eS6 | polymer | 249 | 28755.9 | 1 | UniProt (G1TM55) Pfam (PF01092) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S6 |
| 13 | M (J) | Small ribosomal subunit protein eS7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) Pfam (PF01251) | Oryctolagus cuniculus (rabbit) | |
| 14 | N (K) | Small ribosomal subunit protein eS8 | polymer | 208 | 24163.2 | 1 | UniProt (G1TJW1) Pfam (PF01201) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S8 |
| 15 | O (L) | Small ribosomal subunit protein uS4 | polymer | 194 | 22641.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (rabbit) | |
| 16 | P (M) | Small ribosomal subunit protein eS10 | polymer | 149 | 17156.9 | 1 | UniProt (G1T168) Pfam (PF03501) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S10 |
| 17 | Q (N) | Small ribosomal subunit protein uS17 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (rabbit) | |
| 18 | R (O) | Small ribosomal subunit protein eS12 | polymer | 132 | 14539.0 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (rabbit) | |
| 19 | S (P) | Small ribosomal subunit protein uS15 | polymer | 151 | 17259.4 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (rabbit) | uS15 |
| 20 | T (Q) | Small ribosomal subunit protein uS11 | polymer | 151 | 16302.8 | 1 | UniProt (G1T1F0) Pfam (PF00411) | Oryctolagus cuniculus (rabbit) | |
| 21 | U (R) | Small ribosomal subunit protein uS19 | polymer | 145 | 17049.2 | 1 | UniProt (G1U0Q2) Pfam (PF00203) | Oryctolagus cuniculus (rabbit) | |
| 22 | V (S) | Small ribosomal subunit protein uS9 | polymer | 146 | 16477.4 | 1 | UniProt (G1SGX4) Pfam (PF00380) | Oryctolagus cuniculus (rabbit) | |
| 23 | W (T) | Small ribosomal subunit protein eS17 | polymer | 135 | 15552.1 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (rabbit) | |
| 24 | X (U) | Small ribosomal subunit protein uS13 | polymer | 152 | 17759.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (rabbit) | |
| 25 | Y (V) | Small ribosomal subunit protein eS19 | polymer | 145 | 16235.8 | 1 | UniProt (G1TN62) Pfam (PF01090) | Oryctolagus cuniculus (rabbit) | |
| 26 | Z (W) | Small ribosomal subunit protein uS10 | polymer | 119 | 13398.8 | 1 | UniProt (G1SIZ2) Pfam (PF00338) | Oryctolagus cuniculus (rabbit) | |
| 27 | AA (X) | Small ribosomal subunit protein eS21 | polymer | 83 | 9124.4 | 1 | UniProt (Q32PB8) Pfam (PF01249) | Oryctolagus cuniculus (rabbit) | |
| 28 | BA (Y) | Small ribosomal subunit protein uS8 | polymer | 130 | 14865.6 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (rabbit) | |
| 29 | CA (Z) | Small ribosomal subunit protein uS12 | polymer | 143 | 15844.7 | 1 | UniProt (G1SZ47) Pfam (PF00164) | Oryctolagus cuniculus (rabbit) | RPS23 |
| 30 | DA (a) | 40S ribosomal protein S24 | polymer | 133 | 15434.3 | 1 | UniProt (G1TS40) Pfam (PF01282) | Oryctolagus cuniculus (rabbit) | |
| 31 | EA (b) | Small ribosomal subunit protein eS26 | polymer | 115 | 12961.5 | 1 | UniProt (G1TFE8) Pfam (PF01283) | Oryctolagus cuniculus (rabbit) | |
| 32 | FA (c) | Small ribosomal subunit protein eS27 | polymer | 84 | 9480.2 | 1 | UniProt (G1TZ76) Pfam (PF01667) | Oryctolagus cuniculus (rabbit) | |
| 33 | GA (d) | Small ribosomal subunit protein eS28 | polymer | 69 | 7855.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (rabbit) | |
| 34 | HA (e) | Small ribosomal subunit protein uS14 | polymer | 56 | 6690.8 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (rabbit) | uS14 |
| 35 | IA (f) | Ubiquitin-ribosomal protein eS31 fusion protein | polymer | 156 | 18004.0 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) | Oryctolagus cuniculus (rabbit) | |
| 36 | JA (g) | Small ribosomal subunit protein RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (rabbit) | RACK1 |
| 37 | KA (i) | Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein | polymer | 133 | 14498.9 | 1 | UniProt (G1T8A2) Pfam (PF00240) Pfam (PF04758) | Oryctolagus cuniculus (rabbit) | |
| 38 | LA (j) | Eukaryotic translation initiation factor 4C | polymer | 144 | 16476.4 | 1 | UniProt (G1SYS4) Pfam (PF01176) | Oryctolagus cuniculus (rabbit) | |
| 39 | MA (k) | ATP binding cassette subfamily E member 1 | polymer | 599 | 67419.3 | 1 | UniProt (G1SG72) Pfam (PF04068) Pfam (PF00037) Pfam (PF00005) | Oryctolagus cuniculus (rabbit) | |
| 40 | NA (l) | Small ribosomal subunit protein eS32 | polymer | 25 | 3473.5 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) | Oryctolagus cuniculus (rabbit) | |
| 41 | OA (n) | Small ribosomal subunit protein eS25 | polymer | 124 | 13645.0 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (rabbit) | |
| 42 | PA (o) | Eukaryotic translation initiation factor 5 | polymer | 430 | 49131.5 | 1 | UniProt (G1TGW1) Pfam (PF01873) Pfam (PF02020) | Oryctolagus cuniculus (rabbit) | |
| 43 | QA, RA (k) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) |
Sequence modifications
I: 1 - 249 (UniProt: G1TM55)
j: 1 - 144 (UniProt: G1SYS4)
k: 1 - 599 (UniProt: G1SG72)
| PDB | External Database | Details |
|---|---|---|
| Thr 130 | Pro 130 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ile 39 | Val 39 | conflict |
| Ile 76 | Val 76 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ile 538 | Val 538 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 42 |
| Total formula weight | 1521890.9 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 703.3 | |
| All* | Total formula weight | 1522594.2 |
