9H52
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (a) | GTPase Era, mitochondrial | polymer | 437 | 48413.9 | 1 | UniProt (O75616) | Homo sapiens (human) | H-ERA,hERA,Conserved ERA-like GTPase,CEGA,ERA-W,ERA-like protein 1 |
| 2 | B (0) | Small ribosomal subunit protein mS34 | polymer | 215 | 25336.1 | 1 | UniProt (P82930) | Homo sapiens (human) | 28S ribosomal protein S34,mitochondrial,MRP-S34,S34mt |
| 3 | C (9) | Nitric oxide-associated protein 1 | polymer | 698 | 78565.8 | 1 | UniProt (Q8NC60) | Homo sapiens (human) | |
| 4 | D (D) | 28S ribosomal protein S5, mitochondrial | polymer | 430 | 48094.6 | 1 | UniProt (P82675) | Homo sapiens (human) | MRP-S5,S5mt,Mitochondrial small ribosomal subunit protein uS5m |
| 5 | E (E) | 28S ribosomal protein S6, mitochondrial | polymer | 125 | 14250.6 | 1 | UniProt (P82932) | Homo sapiens (human) | MRP-S6,S6mt,Mitochondrial small ribosomal subunit protein bS6m |
| 6 | F (J) | 28S ribosomal protein S12, mitochondrial | polymer | 138 | 15200.9 | 1 | UniProt (O15235) | Homo sapiens (human) | MRP-S12,S12mt,MT-RPS12,Mitochondrial small ribosomal subunit protein uS12m |
| 7 | G (L) | 28S ribosomal protein S15, mitochondrial | polymer | 257 | 29903.3 | 1 | UniProt (P82914) | Homo sapiens (human) | MRP-S15,S15mt,Mitochondrial small ribosomal subunit protein uS15m |
| 8 | H (M) | 28S ribosomal protein S16, mitochondrial | polymer | 137 | 15371.9 | 1 | UniProt (Q9Y3D3) | Homo sapiens (human) | MRP-S16,S16mt,Mitochondrial small ribosomal subunit protein bS16m |
| 9 | I (N) | 28S ribosomal protein S17, mitochondrial | polymer | 130 | 14526.1 | 1 | UniProt (Q9Y2R5) | Homo sapiens (human) | MRP-S17,S17mt,Mitochondrial small ribosomal subunit protein uS17m |
| 10 | J (O) | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29440.6 | 1 | UniProt (Q9Y676) | Homo sapiens (human) | MRP-S18-b,Mrps18-b,S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2,Mitochondrial small ribosomal subunit protein bS18b,Mitochondrial small ribosomal subunit protein mS40 |
| 11 | K (P) | 28S ribosomal protein S18c, mitochondrial | polymer | 142 | 15876.8 | 1 | UniProt (Q9Y3D5) | Homo sapiens (human) | MRP-S18-c,Mrps18-c,S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1,Mitochondrial small ribosomal subunit protein bS18c,Mitochondrial small ribosomal subunit protein bS18m |
| 12 | L (Q) | MRPS21 isoform 1 | polymer | 87 | 10659.5 | 1 | UniProt (A0A2J8VEN6) | Homo sapiens (human) | MRPS21 isoform 2,Mitochondrial ribosomal protein S21 |
| 13 | M (R) | 28S ribosomal protein S22, mitochondrial | polymer | 360 | 41337.3 | 1 | UniProt (P82650) | Homo sapiens (human) | MRP-S22,S22mt,Mitochondrial small ribosomal subunit protein mS22 |
| 14 | N (S) | 28S ribosomal protein S23, mitochondrial | polymer | 190 | 21805.7 | 1 | UniProt (Q9Y3D9) | Homo sapiens (human) | MRP-S23,S23mt,Mitochondrial small ribosomal subunit protein mS23 |
| 15 | O (T) | 28S ribosomal protein S25, mitochondrial | polymer | 173 | 20146.4 | 1 | UniProt (P82663) | Homo sapiens (human) | MRP-S25,S25mt,Mitochondrial small ribosomal subunit protein mS25 |
| 16 | P (U) | 28S ribosomal protein S26, mitochondrial | polymer | 205 | 24259.8 | 1 | UniProt (Q9BYN8) | Homo sapiens (human) | MRP-S26,S26mt,28S ribosomal protein S13,mitochondrial,MRP-S13,S13mt,Mitochondrial small ribosomal subunit protein mS26 |
| 17 | Q (A) | 12S mitochondrial rRNA | polymer | 955 | 306449.3 | 1 | GenBank (1858621102) | Homo sapiens (human) | |
| 18 | R (B) | 28S ribosomal protein S2, mitochondrial | polymer | 296 | 33298.2 | 1 | UniProt (Q9Y399) | Homo sapiens (human) | MRP-S2,S2mt,Mitochondrial small ribosomal subunit protein uS2m |
| 19 | S (W) | 28S ribosomal protein S28, mitochondrial | polymer | 187 | 20878.8 | 1 | UniProt (Q9Y2Q9) | Homo sapiens (human) | MRP-S28,S28mt,28S ribosomal protein S35,mitochondrial,MRP-S35,S35mt,Mitochondrial small ribosomal subunit protein bS1m |
| 20 | T (C) | 28S ribosomal protein S24, mitochondrial | polymer | 167 | 19046.2 | 1 | UniProt (Q96EL2) | Homo sapiens (human) | MRP-S24,S24mt,Mitochondrial small ribosomal subunit protein uS3m,bMRP-47,bMRP47 |
| 21 | U (F) | 28S ribosomal protein S7, mitochondrial | polymer | 242 | 28186.2 | 1 | UniProt (Q9Y2R9) | Homo sapiens (human) | MRP-S7,S7mt,Mitochondrial small ribosomal subunit protein uS7m,bMRP-27a,bMRP27a |
| 22 | V (G) | 28S ribosomal protein S9, mitochondrial | polymer | 396 | 45909.9 | 1 | UniProt (P82933) | Homo sapiens (human) | MRP-S9,S9mt,Mitochondrial small ribosomal subunit protein uS9m |
| 23 | W (X) | 28S ribosomal protein S29, mitochondrial | polymer | 398 | 45634.4 | 1 | UniProt (P51398) | Homo sapiens (human) | MRP-S29,S29mt,Death-associated protein 3,DAP-3,Ionizing radiation resistance conferring protein,Mitochondrial small ribosomal subunit protein mS29 |
| 24 | X (Y) | 28S ribosomal protein S31, mitochondrial | polymer | 395 | 45391.5 | 1 | UniProt (Q92665) | Homo sapiens (human) | MRP-S31,S31mt,Imogen 38,Mitochondrial small ribosomal subunit protein mS31 |
| 25 | Y (1) | 28S ribosomal protein S35, mitochondrial | polymer | 323 | 36898.3 | 1 | UniProt (P82673) | Homo sapiens (human) | MRP-S35,S35mt,28S ribosomal protein S28,mitochondrial,MRP-S28,S28mt,Mitochondrial small ribosomal subunit protein mS35 |
| 26 | Z (4) | Pentatricopeptide repeat domain-containing protein 3, mitochondrial | polymer | 689 | 78648.5 | 1 | UniProt (Q96EY7) | Homo sapiens (human) | 28S ribosomal protein S39,mitochondrial,MRP-S39,Mitochondrial small ribosomal subunit protein mS39,Transformation-related gene 15 protein,TRG-15 |
| 27 | AA (8) | Malonyl-CoA-acyl carrier protein transacylase, mitochondrial | polymer | 390 | 43019.5 | 1 | UniProt (Q8IVS2) | Homo sapiens (human) | MCT,Mitochondrial malonyl CoA:ACP acyltransferase,Mitochondrial malonyltransferase,[Acyl-carrier-protein] malonyltransferase |
| 28 | BA (7) | Isoform 2 of Ribosome assembly protein METTL17, mitochondrial | polymer | 456 | 50807.5 | 1 | UniProt (Q9H7H0) | Homo sapiens (human) | False p73 target gene protein,Methyltransferase 11 domain-containing protein 1,Methyltransferase-like protein 17,Protein RSM22 homolog,mitochondrial |
| 29 | CA (5) | Dimethyladenosine transferase 1, mitochondrial | polymer | 346 | 39601.0 | 1 | UniProt (Q8WVM0) | Homo sapiens (human) | Mitochondrial 12S rRNA dimethylase 1,Mitochondrial transcription factor B1,h-mtTFB,h-mtTFB1,hTFB1M,mtTFB1,S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase 1 |
| 30 | DA (V) | 28S ribosomal protein S27, mitochondrial | polymer | 414 | 47669.3 | 1 | UniProt (Q92552) | Homo sapiens (human) | MRP-S27,S27mt,Mitochondrial ribosomal protein S27,Mitochondrial small ribosomal subunit protein mS27 |
| 31 | EA, LA (9, X) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 2 | Chemie (GDP) | |||
| 32 | FA (O) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) | |||
| 33 | GA, HA (P, T) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 34 | IA, KA (B, X) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) PubChem (888) | |||
| 35 | JA (X) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 36 | MA (7) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) |
Sequence modifications
Q: 2 - 87 (UniProt: A0A2J8VEN6)
7: 1 - 456 (UniProt: Q9H7H0)
| PDB | External Database | Details |
|---|---|---|
| Ace 1 | - | acetylation |
| PDB | External Database | Details |
|---|---|---|
| Arg 422 | - | insertion |
| Asp 423 | - | insertion |
| Leu 424 | - | insertion |
| Tyr 425 | - | insertion |
| Arg 426 | - | insertion |
| Cys 427 | - | insertion |
| Ala 428 | - | insertion |
| Arg 429 | - | insertion |
| Val 430 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 30 |
| Total formula weight | 1294627.9 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 2210.9 | |
| All* | Total formula weight | 1296838.7 |
