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9GXE

Structure of the SARS-CoV spike glycoprotein in complex with a homotrimeric Bicycle molecule

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, B, C)
Spike glycoproteinpolymer1133125519.13UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)
Severe acute respiratory syndrome coronavirus 2S glycoprotein,E2,Peplomer protein
2D, E, F
(D, E, F)
Homotrimeric bicycle moleculepolymer161507.93synthetic construct
3G, H, I, J, K...
(AA, AB, AC, BA, BB...)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.49In PDB
GlyTouCan (G42666HT)
4AA, BA, CA, DA, EA...
(B, C, A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.221Chemie (NAG)
5FA, MA, W
(B, C, A)
STEARIC ACIDnon-polymer284.53Chemie (STE)
6NA, OA, PA
(D, E, F)
2,4,6-tris(chloromethyl)-1,3,5-triazinenon-polymer226.53Chemie (KZ0)
7QA, RA, SA
(A, B, C)
waterwater18.0139Chemie (HOH)
Sequence modifications
A, B, C: 14 - 1146 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Pro 817Phe 817engineered mutation
Pro 892Ala 892engineered mutation
Pro 899Ala 899engineered mutation
Pro 942Ala 942engineered mutation
Pro 986Lys 986engineered mutation
Pro 987Val 987engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight381081.0
BranchedNumber of molecules9
Total formula weight3819.6
Non-Polymers*Number of molecules27
Total formula weight6178.3
All*Total formula weight391078.9
*Water molecules are not included.

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PDB entries from 2025-04-30

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