9GTU
Collagen VI alpha 1, 2, 3 heterotrimer recombinant C terminal region. Local refinement.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (C) | Collagen alpha-3(VI) chain | polymer | 492 | 53947.3 | 1 | UniProt (P12111) Pfam (PF01391) Pfam (PF00092) | Homo sapiens (human) | |
2 | B (B) | Collagen alpha-2(VI) chain | polymer | 476 | 52290.4 | 1 | UniProt (P12110) Pfam (PF00092) | Homo sapiens (human) | |
3 | C (A) | Collagen alpha-1(VI) chain | polymer | 479 | 51872.4 | 1 | UniProt (P12109) Pfam (PF00092) | Homo sapiens (human) | |
4 | D, E (D, E) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
5 | F, G (C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
6 | H, I (C, B) | water | water | 18.0 | 43 | Chemie (HOH) |
Sequence modifications
C: 2344 - 2820 (UniProt: P12111)
B: 564 - 1019 (UniProt: P12110)
A: 566 - 1028 (UniProt: P12109)
PDB | External Database | Details |
---|---|---|
Asp 2329 | - | expression tag |
Tyr 2330 | - | expression tag |
Lys 2331 | - | expression tag |
Asp 2332 | - | expression tag |
Asp 2333 | - | expression tag |
Asp 2334 | - | expression tag |
Asp 2335 | - | expression tag |
Lys 2336 | - | expression tag |
Gly 2337 | - | expression tag |
Gly 2338 | - | expression tag |
Gly 2339 | - | expression tag |
Gly 2340 | - | expression tag |
Ser 2341 | - | expression tag |
Gly 2342 | - | expression tag |
Gly 2343 | - | expression tag |
Gly 2345 | Asn 2345 | conflict |
Arg 2357 | Asp 2357 | conflict |
Arg 2367 | Lys 2367 | conflict |
Val 2431 | Asp 2431 | variant |
Thr 2441 | Arg 2441 | conflict |
Ala 2609 | Arg 2609 | conflict |
Ala 2610 | Arg 2610 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 544 | - | expression tag |
Ala 545 | - | expression tag |
Trp 546 | - | expression tag |
Ser 547 | - | expression tag |
His 548 | - | expression tag |
Pro 549 | - | expression tag |
Gln 550 | - | expression tag |
Phe 551 | - | expression tag |
Glu 552 | - | expression tag |
Lys 553 | - | expression tag |
Gly 554 | - | expression tag |
Gly 555 | - | expression tag |
Gly 556 | - | expression tag |
Gly 557 | - | expression tag |
Ser 558 | - | expression tag |
Gly 559 | - | expression tag |
Gly 560 | - | expression tag |
Gly 561 | - | expression tag |
Gly 562 | - | expression tag |
Ser 563 | - | expression tag |
His 680 | Arg 680 | conflict |
Asn 966 | Lys 966 | conflict |
Glu 967 | Gln 967 | conflict |
PDB | External Database | Details |
---|---|---|
His 550 | - | expression tag |
His 551 | - | expression tag |
His 552 | - | expression tag |
His 553 | - | expression tag |
His 554 | - | expression tag |
His 555 | - | expression tag |
Gly 556 | - | expression tag |
Gly 557 | - | expression tag |
Gly 558 | - | expression tag |
Gly 559 | - | expression tag |
Ser 560 | - | expression tag |
Gly 561 | - | expression tag |
Gly 562 | - | expression tag |
Gly 563 | - | expression tag |
Gly 564 | - | expression tag |
Ser 565 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 158110.1 | |
Branched | Number of molecules | 2 |
Total formula weight | 1141.1 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 442.4 | |
All* | Total formula weight | 159693.6 |