9GTU
Collagen VI alpha 1, 2, 3 heterotrimer recombinant C terminal region. Local refinement.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | Collagen alpha-3(VI) chain | polymer | 492 | 53947.3 | 1 | UniProt (P12111) Pfam (PF01391) Pfam (PF00092) | Homo sapiens (human) | |
| 2 | B (B) | Collagen alpha-2(VI) chain | polymer | 476 | 52290.4 | 1 | UniProt (P12110) Pfam (PF00092) | Homo sapiens (human) | |
| 3 | C (A) | Collagen alpha-1(VI) chain | polymer | 479 | 51872.4 | 1 | UniProt (P12109) Pfam (PF00092) | Homo sapiens (human) | |
| 4 | D, E (D, E) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
| 5 | F, G (C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 6 | H, I (C, B) | water | water | 18.0 | 43 | Chemie (HOH) |
Sequence modifications
C: 2344 - 2820 (UniProt: P12111)
B: 564 - 1019 (UniProt: P12110)
A: 566 - 1028 (UniProt: P12109)
| PDB | External Database | Details |
|---|---|---|
| Asp 2329 | - | expression tag |
| Tyr 2330 | - | expression tag |
| Lys 2331 | - | expression tag |
| Asp 2332 | - | expression tag |
| Asp 2333 | - | expression tag |
| Asp 2334 | - | expression tag |
| Asp 2335 | - | expression tag |
| Lys 2336 | - | expression tag |
| Gly 2337 | - | expression tag |
| Gly 2338 | - | expression tag |
| Gly 2339 | - | expression tag |
| Gly 2340 | - | expression tag |
| Ser 2341 | - | expression tag |
| Gly 2342 | - | expression tag |
| Gly 2343 | - | expression tag |
| Gly 2345 | Asn 2345 | conflict |
| Arg 2357 | Asp 2357 | conflict |
| Arg 2367 | Lys 2367 | conflict |
| Val 2431 | Asp 2431 | variant |
| Thr 2441 | Arg 2441 | conflict |
| Ala 2609 | Arg 2609 | conflict |
| Ala 2610 | Arg 2610 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 544 | - | expression tag |
| Ala 545 | - | expression tag |
| Trp 546 | - | expression tag |
| Ser 547 | - | expression tag |
| His 548 | - | expression tag |
| Pro 549 | - | expression tag |
| Gln 550 | - | expression tag |
| Phe 551 | - | expression tag |
| Glu 552 | - | expression tag |
| Lys 553 | - | expression tag |
| Gly 554 | - | expression tag |
| Gly 555 | - | expression tag |
| Gly 556 | - | expression tag |
| Gly 557 | - | expression tag |
| Ser 558 | - | expression tag |
| Gly 559 | - | expression tag |
| Gly 560 | - | expression tag |
| Gly 561 | - | expression tag |
| Gly 562 | - | expression tag |
| Ser 563 | - | expression tag |
| His 680 | Arg 680 | conflict |
| Asn 966 | Lys 966 | conflict |
| Glu 967 | Gln 967 | conflict |
| PDB | External Database | Details |
|---|---|---|
| His 550 | - | expression tag |
| His 551 | - | expression tag |
| His 552 | - | expression tag |
| His 553 | - | expression tag |
| His 554 | - | expression tag |
| His 555 | - | expression tag |
| Gly 556 | - | expression tag |
| Gly 557 | - | expression tag |
| Gly 558 | - | expression tag |
| Gly 559 | - | expression tag |
| Ser 560 | - | expression tag |
| Gly 561 | - | expression tag |
| Gly 562 | - | expression tag |
| Gly 563 | - | expression tag |
| Gly 564 | - | expression tag |
| Ser 565 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 158110.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1141.1 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 442.4 | |
| All* | Total formula weight | 159693.6 |






